xps 1.6.2
Christian Stratowa
| Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/xps | | Last Changed Rev: 43527 / Revision: 43539 | | Last Changed Date: 2009-12-11 14:20:12 -0800 (Fri, 11 Dec 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ OK ] | OK | OK |
* checking for file 'xps/DESCRIPTION' ... OK
* preparing 'xps':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package ‘xps’ ...
checking for gcc... gcc-4.2 -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-4.2 -arch i386 -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch i386 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ANSI C... (cached) none needed
found ROOT version 5.24/00 in directory /usr/local/root
** libs
** arch - i386
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c TStat.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c StatUtils.cxx
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSBase.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSUtils.cxx
XPSUtils.cxx:1323: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1323: warning: unused parameter ‘treename’
XPSUtils.cxx:1323: warning: unused parameter ‘varexp’
XPSUtils.cxx:1323: warning: unused parameter ‘selection’
XPSUtils.cxx:1323: warning: unused parameter ‘opt’
XPSUtils.cxx:1712: warning: unused parameter ‘min’
XPSUtils.cxx:1712: warning: unused parameter ‘max’
XPSUtils.cxx:2107: warning: unused parameter ‘n’
XPSUtils.cxx:2107: warning: unused parameter ‘x’
XPSUtils.cxx:2107: warning: unused parameter ‘y’
XPSUtils.cxx:2107: warning: unused parameter ‘z’
XPSUtils.cxx:2107: warning: unused parameter ‘opt’
XPSUtils.cxx:2615: warning: unused parameter ‘index’
XPSUtils.cxx:3068: warning: unused parameter ‘n’
XPSUtils.cxx:3068: warning: unused parameter ‘colors’
XPSUtils.cxx:3068: warning: unused parameter ‘priority’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSSchemes.cxx
XPSSchemes.cxx:10000: warning: unused parameter ‘index’
XPSSchemes.cxx:10011: warning: unused parameter ‘index’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSDataTypes.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSData.cxx
In file included from XPSData.h:47,
from XPSData.cxx:77:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:77:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSData.cxx:494: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1759: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1950: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2472: warning: unused variable ‘fNMasked’
XPSData.cxx:2482: warning: unused variable ‘fNOutlier’
XPSData.cxx:2492: warning: unused variable ‘fNModified’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSProcessing.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSProcessing.cxx:68:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSProcessing.cxx:744: warning: unused parameter ‘name’
XPSProcessing.cxx:1233: warning: unused parameter ‘unit’
XPSProcessing.cxx:1233: warning: unused parameter ‘type’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSHybridizer.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSHybridizer.h:42,
from XPSHybridizer.cxx:53:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSHybridizer.h:42,
from XPSHybridizer.cxx:53:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSHybridizer.cxx:1538: warning: unused parameter ‘num’
XPSHybridizer.cxx:1651: warning: unused parameter ‘num’
XPSHybridizer.cxx:1834: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1834: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1834: warning: unused parameter ‘num’
XPSHybridizer.cxx:1958: warning: unused parameter ‘num’
XPSHybridizer.cxx:2218: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2262: warning: unused parameter ‘x’
XPSHybridizer.cxx:2262: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2450: warning: unused parameter ‘x’
XPSHybridizer.cxx:2450: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3502: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3603: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4178: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1732: warning: ‘pval’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSSelector.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSSelector.h:42,
from XPSSelector.cxx:51:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSSelector.h:42,
from XPSSelector.cxx:51:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSSelector.cxx:315: warning: unused parameter ‘max’
XPSSelector.cxx:315: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:333: warning: ‘par0’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSNormalizer.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSNormalizer.h:42,
from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSNormalizer.h:42,
from XPSNormalizer.cxx:63:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSNormalizer.cxx:533: warning: unused parameter ‘xout’
XPSNormalizer.cxx:610: warning: unused parameter ‘xout’
XPSNormalizer.cxx:689: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1129: warning: unused parameter ‘n’
XPSNormalizer.cxx:1160: warning: unused parameter ‘n’
XPSNormalizer.cxx:1297: warning: unused parameter ‘x’
XPSNormalizer.cxx:1297: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:240: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:239: warning: ‘his2all’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSPreProcessing.h:42,
from XPSPreProcessing.cxx:86:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSPreProcessing.h:42,
from XPSPreProcessing.cxx:86:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:86:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:375: warning: by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2630: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3515: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4862: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4862: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4916: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4936: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5324: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:5966: warning: unused variable ‘scheme_ptr_ptr’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSNormation.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSNormation.h:42,
from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSNormation.h:42,
from XPSNormation.cxx:70:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:70:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning: by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSFilter.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSFilter.h:52,
from XPSFilter.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSFilter.h:52,
from XPSFilter.cxx:42:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:42:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
XPSFilter.cxx:619: warning: unused parameter ‘sepo’
XPSFilter.cxx:1347: warning: unused parameter ‘table’
XPSFilter.cxx:1626: warning: unused parameter ‘infile’
XPSFilter.cxx:1626: warning: unused parameter ‘outfile’
XPSFilter.cxx:1626: warning: unused parameter ‘varlist’
XPSFilter.cxx:1626: warning: unused parameter ‘nrows’
XPSFilter.cxx:1626: warning: unused parameter ‘sepi’
XPSFilter.cxx:1626: warning: unused parameter ‘sepo’
XPSFilter.cxx:1626: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1800: warning: unused variable ‘id’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1653: warning: unused parameter ‘leafname’
XPSFilter.cxx:1834: warning: unused parameter ‘outtree’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSAnalyzer.h:45,
from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSAnalyzer.h:45,
from XPSAnalyzer.cxx:42:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c XPSAnalysis.cxx
In file included from XPSData.h:47,
from XPSProcessing.h:46,
from XPSAnalysis.h:44,
from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
from XPSAnalysis.h:44,
from XPSAnalysis.cxx:63:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1703: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1703: warning: unused parameter ‘n’
XPSAnalysis.cxx:1703: warning: unused parameter ‘names’
XPSAnalysis.cxx:1703: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1703: warning: unused parameter ‘output’
XPSAnalysis.cxx:1703: warning: unused parameter ‘sep’
XPSAnalysis.cxx:1995: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1995: warning: unused parameter ‘n’
XPSAnalysis.cxx:1995: warning: unused parameter ‘names’
XPSAnalysis.cxx:1995: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1995: warning: unused parameter ‘output’
XPSAnalysis.cxx:1995: warning: unused parameter ‘sep’
XPSAnalysis.cxx: In member function ‘virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSAnalysis.cxx:2189: warning: unused variable ‘option’
XPSAnalysis.cxx: At global scope:
XPSAnalysis.cxx:2698: warning: unused parameter ‘n’
XPSAnalysis.cxx:2698: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2835: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2863: warning: unused parameter ‘n’
XPSAnalysis.cxx:2863: warning: unused parameter ‘names’
XPSAnalysis.cxx:2863: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘output’
XPSAnalysis.cxx:2863: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2911: warning: unused parameter ‘n’
XPSAnalysis.cxx:2911: warning: unused parameter ‘names’
XPSAnalysis.cxx:2911: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2911: warning: unused parameter ‘output’
XPSAnalysis.cxx:2911: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2980: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2980: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2980: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3008: warning: unused parameter ‘n’
XPSAnalysis.cxx:3008: warning: unused parameter ‘names’
XPSAnalysis.cxx:3008: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘output’
XPSAnalysis.cxx:3008: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3050: warning: unused parameter ‘n’
XPSAnalysis.cxx:3050: warning: unused parameter ‘names’
XPSAnalysis.cxx:3050: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3050: warning: unused parameter ‘output’
XPSAnalysis.cxx:3050: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3119: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3119: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3119: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3147: warning: unused parameter ‘n’
XPSAnalysis.cxx:3147: warning: unused parameter ‘names’
XPSAnalysis.cxx:3147: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘output’
XPSAnalysis.cxx:3147: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3189: warning: unused parameter ‘n’
XPSAnalysis.cxx:3189: warning: unused parameter ‘names’
XPSAnalysis.cxx:3189: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3189: warning: unused parameter ‘output’
XPSAnalysis.cxx:3189: warning: unused parameter ‘sep’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c rwrapper.cxx
In file included from XPSData.h:47,
from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from rwrapper.cxx:30:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:375: warning: by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from rwrapper.cxx:31:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning: by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
rwrapper.cxx:1437: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/root/include -c xpsDict.cxx
In file included from xpsDict.h:40,
from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:41,
from xpsDict.cxx:16:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from xpsDict.h:46,
from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:375: warning: by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:47,
from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning: by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:48,
from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning: by ‘XAlgorithm::Calculate’
MACOSX_DEPLOYMENT_TARGET=10.5 c++ -dynamiclib -single_module -undefined dynamic_lookup TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/root/lib -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lfreetype -lGui -pthread -Wl,-rpath,/usr/local/root/lib -lm -ldl -lRIO -lGed -lTreePlayer -lTreeViewer -o xps.dylib
ln -sf xps.dylib xps.so
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (xps)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'xps_1.6.2.tar.gz'