oligo 1.10.0
Benilton Carvalho
| Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/oligo | | Last Changed Rev: 42684 / Revision: 43539 | | Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/oligo.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'oligo/DESCRIPTION' ... OK
* this is package 'oligo' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oligo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: basecontent.Rd:14-15: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'oligo' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -Ie:/biocbld/bbs-2.5-bioc/R/src/extra/zlib -DHAVE_ZLIB -I"e:/biocbld/bbs-2.5-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -c ParserXYS.c -o ParserXYS.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -Ie:/biocbld/bbs-2.5-bioc/R/src/extra/zlib -DHAVE_ZLIB -I"e:/biocbld/bbs-2.5-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -c baseProfile.c -o baseProfile.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -Ie:/biocbld/bbs-2.5-bioc/R/src/extra/zlib -DHAVE_ZLIB -I"e:/biocbld/bbs-2.5-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -c basecontent.c -o basecontent.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -Ie:/biocbld/bbs-2.5-bioc/R/src/extra/zlib -DHAVE_ZLIB -I"e:/biocbld/bbs-2.5-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -c rma2.c -o rma2.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -Ie:/biocbld/bbs-2.5-bioc/R/src/extra/zlib -DHAVE_ZLIB -I"e:/biocbld/bbs-2.5-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -c rma_background2.c -o rma_background2.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -Ie:/biocbld/bbs-2.5-bioc/R/src/extra/zlib -DHAVE_ZLIB -I"e:/biocbld/bbs-2.5-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -c rma_common.c -o rma_common.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -Ie:/biocbld/bbs-2.5-bioc/R/src/extra/zlib -DHAVE_ZLIB -I"e:/biocbld/bbs-2.5-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -c trimmed.c -o trimmed.o
gcc -shared -s -o oligo.dll tmp.def ParserXYS.o baseProfile.o basecontent.o rma2.o rma_background2.o rma_common.o trimmed.o -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "boxplot" in "oligo"
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (oligo)