chipseq 0.2.1
Biocore Team c/o BioC user list
| Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/chipseq | | Last Changed Rev: 43194 / Revision: 43539 | | Last Changed Date: 2009-11-21 09:09:50 -0800 (Sat, 21 Nov 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/chipseq.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'chipseq/DESCRIPTION' ... OK
* this is package 'chipseq' version '0.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'chipseq' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
correlation.estimate: no visible binding for global variable 'mu'
correlation.estimate: no visible binding for global variable 'corr'
coverage.estimate: no visible binding for global variable 'mu'
coverage.estimate: no visible binding for global variable 'covered'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'chipseq' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -O3 -Wall -std=gnu99 -c rlesumprod.c -o rlesumprod.o
rlesumprod.c: In function 'rle_sum_prod':
rlesumprod.c:24: warning: operation on 'i1' may be undefined
rlesumprod.c:25: warning: operation on 'i2' may be undefined
rlesumprod.c:27: warning: operation on 'i1' may be undefined
rlesumprod.c:28: warning: operation on 'i2' may be undefined
rlesumprod.c:34: warning: operation on 'i1' may be undefined
rlesumprod.c:35: warning: operation on 'i2' may be undefined
rlesumprod.c: In function 'rle_sum_any':
rlesumprod.c:61: warning: operation on 'i1' may be undefined
rlesumprod.c:62: warning: operation on 'i2' may be undefined
gcc -shared -s -o chipseq.dll tmp.def rlesumprod.o -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
Map,
cbind,
mapply,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rbind,
rep.int,
table
Loading required package: Biostrings
Loading required package: lattice
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (chipseq)