Package: tinesath1probe

Version: 1.0.2

Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes tinesath1probe_1.0.2.tar.gz

StartedAt: 2009-08-10 01:50:00 -0700 (Mon, 10 Aug 2009)

EndedAt: 2009-08-10 01:53:02 -0700 (Mon, 10 Aug 2009)

EllapsedTime: 181.7 seconds

RetCode: 0

Status: OK

CheckDir: tinesath1probe.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-data-experiment/meat/tinesath1probe.Rcheck'
* using R version 2.9.1 Patched (2009-06-28 r48863)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'tinesath1probe/DESCRIPTION' ... OK
* this is package 'tinesath1probe' version '1.0.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tinesath1probe' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* Installing *source* package 'tinesath1probe' ...
** R
** data
** preparing package for lazy loading
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 duplicated,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rank,
	 rbind,
	 rep.int,
	 sapply,
	 sort,
	 table,
	 unique 


*** Deprecation warning ***
The matchprobes package is deprecated and will not be supported
anymore starting with Bioconductor 2.4. Please switch to using the
Biostrings package for efficient string manipulations. If you need
to build a probe package, please see the makeProbePackage vignette
in the AnnotationDbi package.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'tinesath1probe'
     Formats: text html latex example 
  tinesath1probe                    text    html    latex   example
** building package indices ...
* DONE (tinesath1probe)