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Package 293/294HostnameOS / ArchBUILDCHECKBUILD BIN
xps 1.2.10
Christian Stratowa
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/xps
Last Changed Rev: 38744 / Revision: 38965
Last Changed Date: 2009-04-12 10:22:40 -0700 (Sun, 12 Apr 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] WARNINGS  ERROR 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: xps
Version: 1.2.10
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD build xps
StartedAt: 2009-04-18 15:15:26 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:21:55 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 389.4 seconds
RetCode: 0
Status: OK
PackageFile: xps_1.2.10.tar.gz
PackageFileSize: 9.252 MiB

Command output

* checking for file 'xps/DESCRIPTION' ... OK
* preparing 'xps':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: /Library/Frameworks/R.framework/Versions/2.8/Resources/etc/Makeconf: No such file or directory
make: *** No rule to make target `/Library/Frameworks/R.framework/Versions/2.8/Resources/etc/Makeconf'.  Stop.
* installing the package to re-build vignettes
* Installing *source* package 'xps' ...
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
checking for gcc... (cached) gcc -arch i386 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... (cached) yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch - i386
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c TStat.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c StatUtils.cxx
StatUtils.cxx:240: warning: unused parameter 'df'
StatUtils.cxx:264: warning: unused parameter 'df'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSBase.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSUtils.cxx
XPSUtils.cxx:1322: warning: unused parameter 'canvasname'
XPSUtils.cxx:1322: warning: unused parameter 'treename'
XPSUtils.cxx:1322: warning: unused parameter 'varexp'
XPSUtils.cxx:1322: warning: unused parameter 'selection'
XPSUtils.cxx:1322: warning: unused parameter 'opt'
XPSUtils.cxx:1711: warning: unused parameter 'min'
XPSUtils.cxx:1711: warning: unused parameter 'max'
XPSUtils.cxx:2106: warning: unused parameter 'n'
XPSUtils.cxx:2106: warning: unused parameter 'x'
XPSUtils.cxx:2106: warning: unused parameter 'y'
XPSUtils.cxx:2106: warning: unused parameter 'z'
XPSUtils.cxx:2106: warning: unused parameter 'opt'
XPSUtils.cxx:2614: warning: unused parameter 'index'
XPSUtils.cxx:3067: warning: unused parameter 'n'
XPSUtils.cxx:3067: warning: unused parameter 'colors'
XPSUtils.cxx:3067: warning: unused parameter 'priority'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSSchemes.cxx
XPSSchemes.cxx:9943: warning: unused parameter 'index'
XPSSchemes.cxx:9954: warning: unused parameter 'index'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSDataTypes.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSProjectHandler.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSData.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSData.cxx:494: warning: unused parameter 'name'
XPSData.cxx: In member function 'virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)':
XPSData.cxx:1742: warning: label 'cleanup' defined but not used
XPSData.cxx: In member function 'virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)':
XPSData.cxx:1936: warning: label 'cleanup' defined but not used
XPSData.cxx: In member function 'virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)':
XPSData.cxx:2465: warning: unused variable 'fNMasked'
XPSData.cxx:2475: warning: unused variable 'fNOutlier'
XPSData.cxx:2485: warning: unused variable 'fNModified'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSProcessing.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSProcessing.cxx:744: warning: unused parameter 'name'
XPSProcessing.cxx:1233: warning: unused parameter 'unit'
XPSProcessing.cxx:1233: warning: unused parameter 'type'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSHybridizer.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSHybridizer.cxx:1527: warning: unused parameter 'num'
XPSHybridizer.cxx:1640: warning: unused parameter 'num'
XPSHybridizer.cxx:1823: warning: unused parameter 'value1'
XPSHybridizer.cxx:1823: warning: unused parameter 'value2'
XPSHybridizer.cxx:1823: warning: unused parameter 'num'
XPSHybridizer.cxx:1947: warning: unused parameter 'num'
XPSHybridizer.cxx:2207: warning: unused parameter 'msk'
XPSHybridizer.cxx:2251: warning: unused parameter 'x'
XPSHybridizer.cxx:2251: warning: unused parameter 'scale'
XPSHybridizer.cxx:2439: warning: unused parameter 'x'
XPSHybridizer.cxx:2439: warning: unused parameter 'scale'
XPSHybridizer.cxx:3490: warning: unused parameter 'msk'
XPSHybridizer.cxx:3591: warning: unused parameter 'msk'
XPSHybridizer.cxx:4163: warning: unused parameter 'msk'
XPSHybridizer.cxx: In member function 'Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)':
XPSHybridizer.cxx:1721: warning: 'pval' may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSSelector.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSSelector.cxx:315: warning: unused parameter 'max'
XPSSelector.cxx:315: warning: unused parameter 'showGraph'
XPSSelector.cxx: In member function 'Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)':
XPSSelector.cxx:333: warning: 'par0' may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSNormalizer.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSNormalizer.cxx:508: warning: unused parameter 'xout'
XPSNormalizer.cxx:585: warning: unused parameter 'xout'
XPSNormalizer.cxx:664: warning: unused parameter 'xout'
XPSNormalizer.cxx:1059: warning: unused parameter 'n'
XPSNormalizer.cxx:1059: warning: unused parameter 'x'
XPSNormalizer.cxx:1059: warning: unused parameter 'msk'
XPSNormalizer.cxx: In member function 'virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)':
XPSNormalizer.cxx:231: warning: 'his2sel' may be used uninitialized in this function
XPSNormalizer.cxx:230: warning: 'his2all' may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSPreProcessing.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSProcessing.h:282: warning: 'virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)' was hidden
XPSPreProcessing.h:371: warning:   by 'virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)'
XPSPreProcessing.cxx: In member function 'virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)':
XPSPreProcessing.cxx:2658: warning: operation on 'numsels' may be undefined
XPSPreProcessing.cxx: In member function 'virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)':
XPSPreProcessing.cxx:3500: warning: operation on 'numsels' may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4711: warning: unused parameter 'bgrd'
XPSPreProcessing.cxx:4711: warning: unused parameter 'bgdev'
XPSPreProcessing.cxx:4748: warning: unused parameter 'algorithm'
XPSPreProcessing.cxx:4768: warning: unused parameter 'algorithm'
XPSPreProcessing.cxx:5075: warning: unused parameter 'nrow'
XPSPreProcessing.cxx: In member function 'virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)':
XPSPreProcessing.cxx:5684: warning: unused variable 'scheme_ptr_ptr'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSNormation.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSProcessing.h:282: warning: 'virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)' was hidden
XPSNormation.h:215: warning:   by 'virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)'
XPSNormation.cxx:182: warning: unused parameter 'infile'
XPSNormation.cxx:962: warning: unused parameter 'method'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSFilter.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSFilter.h:118: warning: 'virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
XPSFilter.h:118: warning: 'virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
XPSFilter.h:120: warning: 'virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
XPSFilter.cxx:619: warning: unused parameter 'sepo'
XPSFilter.cxx:1347: warning: unused parameter 'table'
XPSFilter.cxx:1626: warning: unused parameter 'infile'
XPSFilter.cxx:1626: warning: unused parameter 'outfile'
XPSFilter.cxx:1626: warning: unused parameter 'varlist'
XPSFilter.cxx:1626: warning: unused parameter 'nrows'
XPSFilter.cxx:1626: warning: unused parameter 'sepi'
XPSFilter.cxx:1626: warning: unused parameter 'sepo'
XPSFilter.cxx:1626: warning: unused parameter 'delim'
XPSFilter.cxx: In member function 'virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)':
XPSFilter.cxx:1800: warning: unused variable 'id'
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1653: warning: unused parameter 'leafname'
XPSFilter.cxx:1834: warning: unused parameter 'outtree'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSAnalyzer.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSAnalyzer.cxx:213: warning: unused parameter 'type'
XPSAnalyzer.cxx:213: warning: unused parameter 'options'
XPSAnalyzer.cxx:213: warning: unused parameter 'npars'
XPSAnalyzer.cxx:213: warning: unused parameter 'pars'
XPSAnalyzer.cxx:227: warning: unused parameter 'infile'
XPSAnalyzer.cxx:227: warning: unused parameter 'outfile'
XPSAnalyzer.cxx:227: warning: unused parameter 'varlist'
XPSAnalyzer.cxx:227: warning: unused parameter 'nrows'
XPSAnalyzer.cxx:227: warning: unused parameter 'nperm'
XPSAnalyzer.cxx:227: warning: unused parameter 'mu'
XPSAnalyzer.cxx:227: warning: unused parameter 'sepi'
XPSAnalyzer.cxx:227: warning: unused parameter 'sepo'
XPSAnalyzer.cxx:227: warning: unused parameter 'delim'
XPSAnalyzer.cxx:227: warning: unused parameter 'linebuf'
XPSAnalyzer.cxx:239: warning: unused parameter 'n'
XPSAnalyzer.cxx:239: warning: unused parameter 'gid'
XPSAnalyzer.cxx:239: warning: unused parameter 'intree'
XPSAnalyzer.cxx:239: warning: unused parameter 'leafname'
XPSAnalyzer.cxx:239: warning: unused parameter 'outtree'
XPSAnalyzer.cxx:239: warning: unused parameter 'varlist'
XPSAnalyzer.cxx:239: warning: unused parameter 'nperm'
XPSAnalyzer.cxx:239: warning: unused parameter 'mu'
XPSAnalyzer.cxx:288: warning: unused parameter 'type'
XPSAnalyzer.cxx:288: warning: unused parameter 'options'
XPSAnalyzer.cxx:288: warning: unused parameter 'npars'
XPSAnalyzer.cxx:288: warning: unused parameter 'pars'
XPSAnalyzer.cxx:302: warning: unused parameter 'infile'
XPSAnalyzer.cxx:302: warning: unused parameter 'outfile'
XPSAnalyzer.cxx:302: warning: unused parameter 'varlist'
XPSAnalyzer.cxx:302: warning: unused parameter 'nrows'
XPSAnalyzer.cxx:302: warning: unused parameter 'nperm'
XPSAnalyzer.cxx:302: warning: unused parameter 'mu'
XPSAnalyzer.cxx:302: warning: unused parameter 'sepi'
XPSAnalyzer.cxx:302: warning: unused parameter 'sepo'
XPSAnalyzer.cxx:302: warning: unused parameter 'delim'
XPSAnalyzer.cxx:302: warning: unused parameter 'linebuf'
XPSAnalyzer.cxx:314: warning: unused parameter 'n'
XPSAnalyzer.cxx:314: warning: unused parameter 'gid'
XPSAnalyzer.cxx:314: warning: unused parameter 'intree'
XPSAnalyzer.cxx:314: warning: unused parameter 'leafname'
XPSAnalyzer.cxx:314: warning: unused parameter 'outtree'
XPSAnalyzer.cxx:314: warning: unused parameter 'varlist'
XPSAnalyzer.cxx:314: warning: unused parameter 'nperm'
XPSAnalyzer.cxx:314: warning: unused parameter 'mu'
XPSAnalyzer.cxx:363: warning: unused parameter 'type'
XPSAnalyzer.cxx:363: warning: unused parameter 'options'
XPSAnalyzer.cxx:363: warning: unused parameter 'npars'
XPSAnalyzer.cxx:363: warning: unused parameter 'pars'
XPSAnalyzer.cxx:377: warning: unused parameter 'infile'
XPSAnalyzer.cxx:377: warning: unused parameter 'outfile'
XPSAnalyzer.cxx:377: warning: unused parameter 'varlist'
XPSAnalyzer.cxx:377: warning: unused parameter 'nrows'
XPSAnalyzer.cxx:377: warning: unused parameter 'nperm'
XPSAnalyzer.cxx:377: warning: unused parameter 'mu'
XPSAnalyzer.cxx:377: warning: unused parameter 'sepi'
XPSAnalyzer.cxx:377: warning: unused parameter 'sepo'
XPSAnalyzer.cxx:377: warning: unused parameter 'delim'
XPSAnalyzer.cxx:377: warning: unused parameter 'linebuf'
XPSAnalyzer.cxx:389: warning: unused parameter 'n'
XPSAnalyzer.cxx:389: warning: unused parameter 'gid'
XPSAnalyzer.cxx:389: warning: unused parameter 'intree'
XPSAnalyzer.cxx:389: warning: unused parameter 'leafname'
XPSAnalyzer.cxx:389: warning: unused parameter 'outtree'
XPSAnalyzer.cxx:389: warning: unused parameter 'varlist'
XPSAnalyzer.cxx:389: warning: unused parameter 'nperm'
XPSAnalyzer.cxx:389: warning: unused parameter 'mu'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c XPSAnalysis.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSFilter.h:118: warning: 'virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
XPSFilter.h:118: warning: 'virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
XPSFilter.h:120: warning: 'virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
XPSAnalysis.cxx:266: warning: unused parameter 'infile'
XPSAnalysis.cxx:444: warning: unused parameter 'type'
XPSAnalysis.cxx:964: warning: unused parameter 'ntree'
XPSAnalysis.cxx:964: warning: unused parameter 'tree'
XPSAnalysis.cxx:964: warning: unused parameter 'n'
XPSAnalysis.cxx:964: warning: unused parameter 'msk'
XPSAnalysis.cxx:1688: warning: unused parameter 'exten'
XPSAnalysis.cxx:1688: warning: unused parameter 'n'
XPSAnalysis.cxx:1688: warning: unused parameter 'names'
XPSAnalysis.cxx:1688: warning: unused parameter 'varlist'
XPSAnalysis.cxx:1688: warning: unused parameter 'output'
XPSAnalysis.cxx:1688: warning: unused parameter 'sep'
XPSAnalysis.cxx:1980: warning: unused parameter 'exten'
XPSAnalysis.cxx:1980: warning: unused parameter 'n'
XPSAnalysis.cxx:1980: warning: unused parameter 'names'
XPSAnalysis.cxx:1980: warning: unused parameter 'varlist'
XPSAnalysis.cxx:1980: warning: unused parameter 'output'
XPSAnalysis.cxx:1980: warning: unused parameter 'sep'
XPSAnalysis.cxx: In member function 'virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)':
XPSAnalysis.cxx:2174: warning: unused variable 'option'
XPSAnalysis.cxx: At global scope:
XPSAnalysis.cxx:2674: warning: unused parameter 'n'
XPSAnalysis.cxx:2674: warning: unused parameter 'tree'
XPSAnalysis.cxx:2811: warning: unused parameter 'leafname'
XPSAnalysis.cxx:2811: warning: unused parameter 'outtree'
XPSAnalysis.cxx:2811: warning: unused parameter 'varlist'
XPSAnalysis.cxx:2839: warning: unused parameter 'exten'
XPSAnalysis.cxx:2839: warning: unused parameter 'n'
XPSAnalysis.cxx:2839: warning: unused parameter 'names'
XPSAnalysis.cxx:2839: warning: unused parameter 'varlist'
XPSAnalysis.cxx:2839: warning: unused parameter 'output'
XPSAnalysis.cxx:2839: warning: unused parameter 'sep'
XPSAnalysis.cxx:2887: warning: unused parameter 'n'
XPSAnalysis.cxx:2887: warning: unused parameter 'names'
XPSAnalysis.cxx:2887: warning: unused parameter 'varlist'
XPSAnalysis.cxx:2887: warning: unused parameter 'output'
XPSAnalysis.cxx:2887: warning: unused parameter 'sep'
XPSAnalysis.cxx:2956: warning: unused parameter 'leafname'
XPSAnalysis.cxx:2956: warning: unused parameter 'outtree'
XPSAnalysis.cxx:2956: warning: unused parameter 'varlist'
XPSAnalysis.cxx:2984: warning: unused parameter 'exten'
XPSAnalysis.cxx:2984: warning: unused parameter 'n'
XPSAnalysis.cxx:2984: warning: unused parameter 'names'
XPSAnalysis.cxx:2984: warning: unused parameter 'varlist'
XPSAnalysis.cxx:2984: warning: unused parameter 'output'
XPSAnalysis.cxx:2984: warning: unused parameter 'sep'
XPSAnalysis.cxx:3026: warning: unused parameter 'n'
XPSAnalysis.cxx:3026: warning: unused parameter 'names'
XPSAnalysis.cxx:3026: warning: unused parameter 'varlist'
XPSAnalysis.cxx:3026: warning: unused parameter 'output'
XPSAnalysis.cxx:3026: warning: unused parameter 'sep'
XPSAnalysis.cxx:3095: warning: unused parameter 'leafname'
XPSAnalysis.cxx:3095: warning: unused parameter 'outtree'
XPSAnalysis.cxx:3095: warning: unused parameter 'varlist'
XPSAnalysis.cxx:3123: warning: unused parameter 'exten'
XPSAnalysis.cxx:3123: warning: unused parameter 'n'
XPSAnalysis.cxx:3123: warning: unused parameter 'names'
XPSAnalysis.cxx:3123: warning: unused parameter 'varlist'
XPSAnalysis.cxx:3123: warning: unused parameter 'output'
XPSAnalysis.cxx:3123: warning: unused parameter 'sep'
XPSAnalysis.cxx:3165: warning: unused parameter 'n'
XPSAnalysis.cxx:3165: warning: unused parameter 'names'
XPSAnalysis.cxx:3165: warning: unused parameter 'varlist'
XPSAnalysis.cxx:3165: warning: unused parameter 'output'
XPSAnalysis.cxx:3165: warning: unused parameter 'sep'
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c rwrapper.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSProcessing.h:282: warning: 'virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)' was hidden
XPSPreProcessing.h:371: warning:   by 'virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)'
XPSProcessing.h:282: warning: 'virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)' was hidden
XPSNormation.h:215: warning:   by 'virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)'
rwrapper.cxx:1382: warning: unused parameter 'level'
Generating dictionary xpsDict.cxx...
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -I/usr/local/include/root -c xpsDict.cxx
XPSProjectHandler.h:84: warning: unused parameter 'name'
XPSData.h:677: warning: unused parameter 'min'
XPSData.h:677: warning: unused parameter 'max'
XPSData.h:677: warning: unused parameter 'var2sort'
XPSData.h:677: warning: unused parameter 'down'
XPSProcessing.h:282: warning: 'virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)' was hidden
XPSPreProcessing.h:371: warning:   by 'virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)'
XPSProcessing.h:282: warning: 'virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)' was hidden
XPSNormation.h:215: warning:   by 'virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)'
XPSFilter.h:118: warning: 'virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
XPSFilter.h:118: warning: 'virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
XPSFilter.h:120: warning: 'virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)' was hidden
XPSBase.h:427: warning:   by 'XAlgorithm::Calculate'
MACOSX_DEPLOYMENT_TARGET=10.4 c++ -dynamiclib -single_module -undefined dynamic_lookup TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/lib/root -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lfreetype -lGui -lpthread -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.dylib 
ln -sf xps.dylib xps.so
** R
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'xps'
     Formats: text html latex example 
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** building package indices ...
* DONE (xps)
* creating vignettes ... OK
* cleaning src
make: /Library/Frameworks/R.framework/Versions/2.8/Resources/etc/Makeconf: No such file or directory
make: *** No rule to make target `/Library/Frameworks/R.framework/Versions/2.8/Resources/etc/Makeconf'.  Stop.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'xps_1.2.10.tar.gz'