sigPathway 1.10.0
Weil Lai
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/sigPathway | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for file 'sigPathway/DESCRIPTION' ... OK
* preparing 'sigPathway':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst19618859
---------- Making package sigPathway ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making calc_gene_set_internal.d from calc_gene_set_internal.c
making calc_gene_set_stat.d from calc_gene_set_stat.c
making calc_probe_stat.d from calc_probe_stat.c
making calc_weights.d from calc_weights.c
making matrix_fn.d from matrix_fn.c
making permute.d from permute.c
making shuffle.d from shuffle.c
making sigPathway.d from sigPathway.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c calc_probe_stat.c -o calc_probe_stat.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c calc_weights.c -o calc_weights.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c matrix_fn.c -o matrix_fn.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c permute.c -o permute.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c shuffle.c -o shuffle.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c sigPathway.c -o sigPathway.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i sigPathway_res.rc -o sigPathway_res.o
gcc -std=gnu99 -shared -s -o sigPathway.dll sigPathway.def calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o sigPathway_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -Le:/biocbld/bbs-2.3-bioc/R/bin -lRlapack -Le:/biocbld/bbs-2.3-bioc/R/bin -lRblas -lgfortran -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package sigPathway for lazy loading
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'sigPathway'
Formats: text html latex example chm
MuscleExample text html latex chm
calcTNullFast text html latex chm
calcTStatFast text html latex example chm
calculate.GSEA text html latex chm
calculate.NGSk text html latex example chm
calculatePathwayStatistics text html latex example chm
estimateNumPerm text html latex example chm
getPathwayStatistics.NGSk text html latex chm
getPathwayStatistics text html latex chm
importGeneSets text html latex chm
rankPathways.NGSk text html latex chm
rankPathways text html latex chm
runSigPathway text html latex example chm
selectGeneSets text html latex chm
writeSigPathway text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\sigPathway\chm\sigPathway.chm
Compile time: 0 minutes, 0 seconds
16 Topics
39 Local links
11 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\sigPathway\chm\sigPathway.chm, 39,525 bytes
Compression decreased file by 32,050 bytes.
adding MD5 sums
* DONE (sigPathway)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
file 'sigPathway/src/Makevars' had non-LF line endings
* checking for empty or unneeded directories
* building 'sigPathway_1.10.0.tar.gz'