rtracklayer 1.2.2
Michael Lawrence
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/rtracklayer | | Last Changed Rev: 35218 / Revision: 38965 | | Last Changed Date: 2008-11-10 08:36:42 -0800 (Mon, 10 Nov 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/rtracklayer.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* this is package 'rtracklayer' version '1.2.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rtracklayer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
activeView,argoView: no visible binding for global variable 'active'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating rtracklayer-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating rtracklayer-manual.tex ... OK
* checking rtracklayer-manual.tex using pdflatex ... OK
* Installing *source* package 'rtracklayer' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RCurl
** help
>>> Building/Updating help pages for package 'rtracklayer'
Formats: text html latex example
activeView-methods text html latex example
argoSession-class text html latex
argoView-class text html latex
basicTrackLine-class text html latex
browseGenome text html latex example
browserSession-class text html latex
browserSession-methods text html latex
browserView-class text html latex
browserView-methods text html latex example
browserViews-methods text html latex example
chrid-class text html latex
chrid-methods text html latex example
cpneTrack text html latex example
dataVals-methods text html latex example
export text html latex example
export.gff text html latex example
genomeBrowsers text html latex
genomeSegment-class text html latex
genomeSegment-methods text html latex example
genomeSequence-methods text html latex
import text html latex example
import.gff text html latex example
laySequence-methods text html latex
layTrack-methods text html latex example
trackData text html latex
trackSet-class text html latex
trackSet-methods text html latex example
trackSets-class text html latex
trackSets-methods text html latex
tracks-methods text html latex
ucscSession-class text html latex
ucscTable text html latex
ucscTrackLine-class text html latex
ucscTrackModes-class text html latex
ucscTrackModes-methods text html latex example
ucscTrackSet-class text html latex
ucscView-class text html latex
wigTrackLine-class text html latex
** building package indices ...
* DONE (rtracklayer)