prada 1.18.0
Florian Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/prada | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/prada.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'prada/DESCRIPTION' ... OK
* this is package 'prada' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'prada' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gatePoints: no visible binding for global variable ‘prev’
killProgress: no visible binding for global variable
‘.tkprogress.canceled’
killProgress: no visible binding for global variable
‘.tkprogress.window’
progress: no visible binding for global variable ‘.tkprogress.window’
progress: no visible binding for '<<-' assignment to
‘.tkprogress.labelText’
progress: no visible binding for global variable
‘.tkprogress.labelText’
progress: no visible binding for global variable ‘.tkprogress.iterator’
progress: no visible binding for global variable
‘.tkprogress.fallbackIterator’
progress : <anonymous>: no visible binding for '<<-' assignment to
‘.tkprogress.canceled’
updateProgress: no visible binding for '<<-' assignment to
‘.tkprogress.iterator’
updateProgress: no visible binding for global variable
‘.tkprogress.iterator’
updateProgress: no visible binding for '<<-' assignment to
‘.tkprogress.fallbackIterator’
updateProgress: no visible binding for global variable
‘.tkprogress.fallbackIterator’
updateProgress: no visible binding for '<<-' assignment to
‘.tkprogress.labelText’
updateProgress: no visible binding for global variable
‘.tkprogress.labelText’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating prada-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating prada-manual.tex ... OK
* checking prada-manual.tex using pdflatex ... OK
* Installing *source* package 'prada' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o prada.so inPolygon.o -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 0.5-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "colnames" in "prada"
Creating a new generic function for "nrow" in "prada"
Creating a new generic function for "ncol" in "prada"
Creating a new generic function for "split" in "prada"
** help
>>> Building/Updating help pages for package 'prada'
Formats: text html latex example
analysePlate text html latex example
as.all text html latex example
barploterrbar text html latex example
Note: ignoring empty \keyword entries in file 'combineFrames.Rd'
Note: removing empty section \details in file 'combineFrames.Rd'
Note: removing empty section \seealso in file 'combineFrames.Rd'
combineFrames text html latex example
csApply text html latex example
cytoFrame-class text html latex example
cytoSet-class text html latex example
data-cytoFrame text html latex example
data-cytoSet text html latex example
Note: ignoring empty \keyword entries in file 'devDims.Rd'
devDims text html latex example
Note: ignoring empty \keyword entries in file 'devRes.Rd'
devRes text html latex example
Note: ignoring empty \keyword entries in file 'fitNorm2.Rd'
fitNorm2 text html latex example
gate-class text html latex example
gateSet-class text html latex example
getPradaPar text html latex example
new-internal text html latex
Note: ignoring empty \keyword entries in file 'plotNorm2.Rd'
plotNorm2 text html latex example
plotPlate text html latex example
readCytoSet text html latex example
readFCS text html latex example
Note: removing empty section \examples in file 'readFCSaux.Rd'
readFCSaux text html latex
Note: ignoring empty \keyword entries in file 'removeCensored.Rd'
Note: removing empty section \seealso in file 'removeCensored.Rd'
removeCensored text html latex example
Note: removing empty section \seealso in file 'tcltkProgress.Rd'
tcltkProgress text html latex example
threePanelPlot text html latex example
Note: ignoring empty \keyword entries in file 'thresholds.Rd'
Note: removing empty section \seealso in file 'thresholds.Rd'
thresholds text html latex example
touchFCS text html latex
Note: ignoring empty \keyword entries in file 'vpLocation.Rd'
vpLocation text html latex example
** building package indices ...
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: methods
* DONE (prada)