ppiStats 1.8.0
Tony Chiang
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ppiStats | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | [ OK ] | OK | OK |
* checking for file 'ppiStats/DESCRIPTION' ... OK
* preparing 'ppiStats':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'ppiStats' ...
** R
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: GOstats
Loading required package: graph
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: org.Sc.sgd.db
Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: grid
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Loading required package: ScISI
Loading required package: apComplex
Loading required package: RpsiXML
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Loading required package: lattice
Loading required package: RColorBrewer
** help
>>> Building/Updating help pages for package 'ppiStats'
Formats: text html latex example
assessSymmetry text html latex example
bpMatrix text html latex example
calcInOutDegStats text html latex example
createSummaryTables text html latex example
degreeEstimates text html latex example
estErrProbMethodOfMoments text html latex example
estimateCCMErrorRates text html latex example
estimatePPIErrorRates text html latex example
Note: removing empty section \examples in file 'findAdjacent.Rd'
findAdjacent text html latex
genBPGraph text html latex example
Note: removing empty section \references in file 'hgParams.Rd'
Note: removing empty section \examples in file 'hgParams.Rd'
hgParams text html latex
Note: removing empty section \references in file 'hgTests.Rd'
Note: removing empty section \examples in file 'hgTests.Rd'
hgTests text html latex
idProteinErrorType text html latex example
idProteinType text html latex example
inOutScatterCharts text html latex example
nullDistDoublyTestedEdges text html latex example
separateExptBySize text html latex
twPERM text html latex example
viabilityCharts text html latex example
** building package indices ...
* DONE (ppiStats)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ppiStats_1.8.0.tar.gz'