Package: panp

Version: 1.12.0

Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes panp_1.12.0.tar.gz

StartedAt: 2009-04-18 16:14:10 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 16:14:32 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 21.5 seconds

RetCode: 0

Status: OK

CheckDir: panp.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/panp.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'panp/DESCRIPTION' ... OK
* this is package 'panp' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'panp' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
pa.calls: no visible binding for global variable ‘NSMPnames.hgu133a’
pa.calls: no visible binding for global variable
  ‘NSMPnames.hgu133plus2’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating panp-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating panp-manual.tex ... OK
* checking panp-manual.tex using pdflatex ... OK

* Installing *source* package 'panp' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'panp'
     Formats: text html latex example 
  NSMPnames.hgu133a                 text    html    latex
  NSMPnames.hgu133plus2             text    html    latex
  gcrma.ExpressionSet               text    html    latex
  pa.calls                          text    html    latex   example
** building package indices ...
* DONE (panp)