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Package 198/294HostnameOS / ArchBUILDCHECKBUILD BIN
pamr 1.40.1
Rob Tibshirani
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/pamr
Last Changed Rev: 38931 / Revision: 38965
Last Changed Date: 2009-04-17 09:17:15 -0700 (Fri, 17 Apr 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: pamr
Version: 1.40.1
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD INSTALL --build --library=pamr.buildbin-libdir pamr_1.40.1.tar.gz
StartedAt: 2009-04-18 20:46:54 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 20:47:11 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 17.4 seconds
RetCode: 0
Status: OK
PackageFile: pamr_1.40.1.zip
PackageFileSize: 1.328 MiB

Command output

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/pamr.buildbin-libdir

Using auto-selected zip options 'pamr-ZIPDATA=zip pamr-HELP=ziponly'

---------- Making package pamr ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making cox_func.d from cox_func.c
gcc  -std=gnu99  -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c cox_func.c -o cox_func.o
gfortran   -O3  -c knnimpute.f -o knnimpute.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.3-bioc/R/include  -i pamr_res.rc -o pamr_res.o
gcc  -std=gnu99  -shared -s  -o pamr.dll pamr.def cox_func.o knnimpute.o pamr_res.o  -LE:/biocbld/bbs-2.3-bioc/R/bin   -lgfortran -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
 >>> Building/Updating help pages for package 'pamr'
     Formats: text html latex example chm 
Note: removing empty section \source in file 'khan.Rd'
Note: removing empty section \format in file 'khan.Rd'
Note: removing empty section \references in file 'khan.Rd'
Note: removing empty section \source in file 'khan.Rd'
Note: removing empty section \format in file 'khan.Rd'
Note: removing empty section \references in file 'khan.Rd'
  khan                              text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.adaptthresh.Rd'
Note: ignoring empty \keyword entries in file 'pamr.adaptthresh.Rd'
  pamr.adaptthresh                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.batchadjust.Rd'
Note: removing empty section \references in file 'pamr.batchadjust.Rd'
Note: ignoring empty \keyword entries in file 'pamr.batchadjust.Rd'
Note: removing empty section \references in file 'pamr.batchadjust.Rd'
  pamr.batchadjust                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.confusion.Rd'
Note: removing empty section \references in file 'pamr.confusion.Rd'
Note: ignoring empty \keyword entries in file 'pamr.confusion.Rd'
Note: removing empty section \references in file 'pamr.confusion.Rd'
  pamr.confusion                    text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.confusion.survival.Rd'
Note: removing empty section \details in file 'pamr.confusion.survival.Rd'
Note: removing empty section \references in file 'pamr.confusion.survival.Rd'
Note: removing empty section \examples in file 'pamr.confusion.survival.Rd'
Note: ignoring empty \keyword entries in file 'pamr.confusion.survival.Rd'
Note: removing empty section \details in file 'pamr.confusion.survival.Rd'
Note: removing empty section \references in file 'pamr.confusion.survival.Rd'
Note: removing empty section \examples in file 'pamr.confusion.survival.Rd'
  pamr.confusion.survival           text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.cv.Rd'
Note: removing empty section \references in file 'pamr.cv.Rd'
Note: ignoring empty \keyword entries in file 'pamr.cv.Rd'
Note: removing empty section \references in file 'pamr.cv.Rd'
  pamr.cv                           text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.decorrelate.Rd'
Note: ignoring empty \keyword entries in file 'pamr.decorrelate.Rd'
  pamr.decorrelate                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.fdr.Rd'
Note: removing empty section \references in file 'pamr.fdr.Rd'
Note: ignoring empty \keyword entries in file 'pamr.fdr.Rd'
Note: removing empty section \references in file 'pamr.fdr.Rd'
  pamr.fdr                          text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.from.excel.Rd'
Note: removing empty section \references in file 'pamr.from.excel.Rd'
Note: ignoring empty \keyword entries in file 'pamr.from.excel.Rd'
Note: removing empty section \references in file 'pamr.from.excel.Rd'
  pamr.from.excel                   text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.geneplot.Rd'
Note: removing empty section \references in file 'pamr.geneplot.Rd'
Note: ignoring empty \keyword entries in file 'pamr.geneplot.Rd'
Note: removing empty section \references in file 'pamr.geneplot.Rd'
  pamr.geneplot                     text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.indeterminate.Rd'
Note: removing empty section \details in file 'pamr.indeterminate.Rd'
Note: removing empty section \references in file 'pamr.indeterminate.Rd'
Note: ignoring empty \keyword entries in file 'pamr.indeterminate.Rd'
Note: removing empty section \details in file 'pamr.indeterminate.Rd'
Note: removing empty section \references in file 'pamr.indeterminate.Rd'
  pamr.indeterminate                text    html    latex   example chm
  pamr.internal                     text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.knnimpute.Rd'
Note: ignoring empty \keyword entries in file 'pamr.knnimpute.Rd'
  pamr.knnimpute                    text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.listgenes.Rd'
Note: removing empty section \references in file 'pamr.listgenes.Rd'
Note: ignoring empty \keyword entries in file 'pamr.listgenes.Rd'
Note: removing empty section \references in file 'pamr.listgenes.Rd'
  pamr.listgenes                    text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.makeclasses.Rd'
Note: removing empty section \references in file 'pamr.makeclasses.Rd'
Note: ignoring empty \keyword entries in file 'pamr.makeclasses.Rd'
Note: removing empty section \references in file 'pamr.makeclasses.Rd'
  pamr.makeclasses                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.menu.Rd'
Note: removing empty section \value in file 'pamr.menu.Rd'
Note: removing empty section \references in file 'pamr.menu.Rd'
Note: ignoring empty \keyword entries in file 'pamr.menu.Rd'
Note: removing empty section \value in file 'pamr.menu.Rd'
Note: removing empty section \references in file 'pamr.menu.Rd'
  pamr.menu                         text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotcen.Rd'
Note: removing empty section \references in file 'pamr.plotcen.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotcen.Rd'
Note: removing empty section \references in file 'pamr.plotcen.Rd'
  pamr.plotcen                      text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotcv.Rd'
Note: removing empty section \value in file 'pamr.plotcv.Rd'
Note: removing empty section \references in file 'pamr.plotcv.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotcv.Rd'
Note: removing empty section \value in file 'pamr.plotcv.Rd'
Note: removing empty section \references in file 'pamr.plotcv.Rd'
  pamr.plotcv                       text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotcvprob.Rd'
Note: removing empty section \value in file 'pamr.plotcvprob.Rd'
Note: removing empty section \references in file 'pamr.plotcvprob.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotcvprob.Rd'
Note: removing empty section \value in file 'pamr.plotcvprob.Rd'
Note: removing empty section \references in file 'pamr.plotcvprob.Rd'
  pamr.plotcvprob                   text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotfdr.Rd'
Note: removing empty section \value in file 'pamr.plotfdr.Rd'
Note: removing empty section \references in file 'pamr.plotfdr.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotfdr.Rd'
Note: removing empty section \value in file 'pamr.plotfdr.Rd'
Note: removing empty section \references in file 'pamr.plotfdr.Rd'
  pamr.plotfdr                      text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotstrata.Rd'
Note: removing empty section \value in file 'pamr.plotstrata.Rd'
Note: removing empty section \details in file 'pamr.plotstrata.Rd'
Note: removing empty section \references in file 'pamr.plotstrata.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotstrata.Rd'
Note: removing empty section \value in file 'pamr.plotstrata.Rd'
Note: removing empty section \details in file 'pamr.plotstrata.Rd'
Note: removing empty section \references in file 'pamr.plotstrata.Rd'
  pamr.plotstrata                   text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotsurvival.Rd'
Note: removing empty section \value in file 'pamr.plotsurvival.Rd'
Note: removing empty section \details in file 'pamr.plotsurvival.Rd'
Note: removing empty section \references in file 'pamr.plotsurvival.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotsurvival.Rd'
Note: removing empty section \value in file 'pamr.plotsurvival.Rd'
Note: removing empty section \details in file 'pamr.plotsurvival.Rd'
Note: removing empty section \references in file 'pamr.plotsurvival.Rd'
  pamr.plotsurvival                 text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.predict.Rd'
Note: removing empty section \references in file 'pamr.predict.Rd'
Note: ignoring empty \keyword entries in file 'pamr.predict.Rd'
Note: removing empty section \references in file 'pamr.predict.Rd'
  pamr.predict                      text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.predictmany.Rd'
Note: removing empty section \details in file 'pamr.predictmany.Rd'
Note: removing empty section \references in file 'pamr.predictmany.Rd'
Note: ignoring empty \keyword entries in file 'pamr.predictmany.Rd'
Note: removing empty section \details in file 'pamr.predictmany.Rd'
Note: removing empty section \references in file 'pamr.predictmany.Rd'
  pamr.predictmany                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.surv.to.class2.Rd'
Note: ignoring empty \keyword entries in file 'pamr.surv.to.class2.Rd'
  pamr.surv.to.class2               text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.test.errors.surv.compute.Rd'
Note: removing empty section \references in file 'pamr.test.errors.surv.compute.Rd'
Note: ignoring empty \keyword entries in file 'pamr.test.errors.surv.compute.Rd'
Note: removing empty section \references in file 'pamr.test.errors.surv.compute.Rd'
  pamr.test.errors.surv.compute     text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.to.excel.Rd'
Note: ignoring empty \keyword entries in file 'pamr.to.excel.Rd'
  pamr.to.excel                     text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.train.Rd'
Note: ignoring empty \keyword entries in file 'pamr.train.Rd'
  pamr.train                        text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\R.INSTALL.432\pamr\chm\pamr.chm





Compile time: 0 minutes, 1 second

29	Topics

55	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\R.INSTALL.432\pamr\chm\pamr.chm, 53,795 bytes

Compression decreased file by 55,858 bytes.

  adding MD5 sums

packaged installation of package 'pamr' as pamr_1.40.1.zip
* DONE (pamr)