metaArray 1.16.0
Hyungwon Choi
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/metaArray | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/metaArray.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'metaArray/DESCRIPTION' ... OK
* this is package 'metaArray' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'metaArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
poe.mcmc: no visible binding for global variable 'R0'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating metaArray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating metaArray-manual.tex ... OK
* checking metaArray-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/metaArray.Rcheck
---------- Making package metaArray ------------
adding build stamp to DESCRIPTION
making DLL ...
making contr.d from contr.c
making dproc.d from dproc.c
making dproc2.d from dproc2.c
making intcor.d from intcor.c
making lowess.d from lowess.c
making mmath.d from mmath.c
making perm.d from perm.c
making poe.d from poe.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c contr.c -o contr.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c dproc.c -o dproc.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c dproc2.c -o dproc2.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c intcor.c -o intcor.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c lowess.c -o lowess.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c mmath.c -o mmath.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c perm.c -o perm.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:431: warning: suggest parentheses around comparison in operand of &
poe.c:437: warning: suggest parentheses around comparison in operand of &
poe.c:438: warning: suggest parentheses around comparison in operand of |
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i metaArray_res.rc -o metaArray_res.o
gcc -std=gnu99 -shared -s -o metaArray.dll metaArray.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o metaArray_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lm -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package metaArray for lazy loading
Loading required package: MergeMaid
Loading required package: survival
Loading required package: splines
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: MASS
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'metaArray'
Formats: text html latex example chm
Zscore text html latex example chm
Note: removing empty section \examples in file 'em.draw.Rd'
Note: removing empty section \examples in file 'em.draw.Rd'
em.draw text html latex chm
Note: removing empty section \examples in file 'find.init.Rd'
Note: removing empty section \examples in file 'find.init.Rd'
find.init text html latex chm
Note: removing empty section \examples in file 'fit.em.Rd'
Note: removing empty section \examples in file 'fit.em.Rd'
fit.em text html latex chm
intcor text html latex example chm
logit text html latex chm
mdata text html latex chm
Note: removing empty section \examples in file 'poe.em.Rd'
Note: removing empty section \examples in file 'poe.em.Rd'
poe.em text html latex chm
poe.mcmc text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\metaArray.Rcheck\00_pkg_src\metaArray\chm\metaArray.chm
Compile time: 0 minutes, 0 seconds
10 Topics
13 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\metaArray.Rcheck\00_pkg_src\metaArray\chm\metaArray.chm, 26,054 bytes
Compression decreased file by 2,001 bytes.
adding MD5 sums
* DONE (metaArray)