Rintact 1.4.0
Tony Chiang
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Rintact | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/Rintact.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'Rintact/DESCRIPTION' ... OK
* this is package 'Rintact' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rintact' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eListHandler : startElement: no visible binding for '<<-' assignment to
'curEL'
eListHandler : startElement: no visible binding for global variable
'curEL'
eListHandler : text: no visible binding for global variable 'curEL'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Rintact-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Rintact-manual.tex ... OK
* checking Rintact-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/Rintact.Rcheck
---------- Making package Rintact ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package Rintact for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: XML
Loading required package: graph
Attaching package: 'graph'
The following object(s) are masked from package:XML :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:utils :
head,
tail
Loading required package: RBGL
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'Rintact'
Formats: text html latex example chm
bait text html latex example chm
complexEntry text html latex chm
complexes text html latex example chm
eListHandler text html latex example chm
intactComplex text html latex chm
intactGraph text html latex chm
intactHyperGraph text html latex chm
intactInteraction text html latex chm
Note: removing empty section \examples in file 'intactXML2Graph.Rd'
Note: removing empty section \examples in file 'intactXML2Graph.Rd'
intactXML2Graph text html latex chm
interactionEntry text html latex chm
interactions text html latex example chm
interactors text html latex example chm
Note: removing empty section \references in file 'list2Matrix.Rd'
Note: removing empty section \references in file 'list2Matrix.Rd'
list2Matrix text html latex example chm
organismName text html latex example chm
prey text html latex example chm
psi25interaction text html latex example chm
releaseDate text html latex example chm
Note: removing empty section \examples in file 'separateXMLDataByExpt.Rd'
Note: removing empty section \examples in file 'separateXMLDataByExpt.Rd'
separateXMLDataByExpt text html latex chm
taxId text html latex example chm
translateIntactID text html latex example chm
translateNodeID text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\Rintact.Rcheck\00_pkg_src\Rintact\chm\Rintact.chm
Compile time: 0 minutes, 0 seconds
22 Topics
92 Local links
11 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\Rintact.Rcheck\00_pkg_src\Rintact\chm\Rintact.chm, 33,922 bytes
Compression decreased file by 35,862 bytes.
adding MD5 sums
* DONE (Rintact)