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Package 225/294HostnameOS / ArchBUILDCHECKBUILD BIN
RBGL 1.18.0
Li Long
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/RBGL
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: RBGL
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD build RBGL
StartedAt: 2009-04-18 14:02:10 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 14:05:29 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 199.0 seconds
RetCode: 0
Status: OK
PackageFile: RBGL_1.18.0.tar.gz
PackageFileSize: 1.437 MiB

Command output

* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
removing exploded boost header source...
* installing the package to re-build vignettes
* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c bbc.cpp -o bbc.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c cliques.cpp -o cliques.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c clusteringCoef.cpp -o clusteringCoef.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c dominatorTree.cpp -o dominatorTree.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c hcs.cpp -o hcs.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c incrConnComp.cpp -o incrConnComp.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c interfaces.cpp -o interfaces.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c layout.cpp -o layout.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c minST.cpp -o minST.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c mincut.cpp -o mincut.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c ordering.cpp -o ordering.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c shortestPath.cpp -o shortestPath.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c sna.cpp -o sna.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c transitive_closure.cpp -o transitive_closure.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c wavefront.cpp -o wavefront.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
** help
 >>> Building/Updating help pages for package 'RBGL'
     Formats: text html latex example 
  FileDep                           text    html    latex   example
  RBGL.overview                     text    html    latex
Note: removing empty section \value in file 'astarSearch.Rd'
Note: removing empty section \seealso in file 'astarSearch.Rd'
  astarSearch                       text    html    latex   example
Note: removing empty section \seealso in file 'bandwidth.Rd'
  bandwidth                         text    html    latex   example
  bccluster                         text    html    latex   example
  bellman.ford.sp                   text    html    latex   example
  betweenness                       text    html    latex   example
  bfs                               text    html    latex   example
Note: removing empty section \seealso in file 'biConnComp.Rd'
  biConnComp                        text    html    latex   example
Note: removing empty section \value in file 'boyerMyrvoldPlanarityTest.Rd'
Note: removing empty section \details in file 'boyerMyrvoldPlanarityTest.Rd'
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  boyerMyrvoldPlanarityTest         text    html    latex
Note: removing empty section \value in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \details in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \examples in file 'chrobakPayneStraightLineDrawing.Rd'
  chrobakPayneStraightLineDrawing   text    html    latex
  clusteringCoef                    text    html    latex   example
  clusteringCoefAppr                text    html    latex   example
Note: removing empty section \seealso in file 'coloring.Rd'
  coloring                          text    html    latex   example
  connectedComp                     text    html    latex   example
  dag.sp                            text    html    latex   example
  dijkstra.sp                       text    html    latex   example
Note: removing empty section \seealso in file 'dominatorTree.Rd'
  dominatorTree                     text    html    latex   example
  edgeConn                          text    html    latex   example
Note: removing empty section \value in file 'edmondsMaxCardinalityMatching.Rd'
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  edmondsMaxCardinalityMatching     text    html    latex
  extractPath                       text    html    latex   example
  floyd.warshall.all.pairs.sp       text    html    latex   example
Note: removing empty section \seealso in file 'gprofile.Rd'
  gprofile                          text    html    latex   example
  graphGenerator                    text    html    latex   example
  highlyConnSG                      text    html    latex   example
  incrConnComp                      text    html    latex   example
Note: removing empty section \seealso in file 'is.triangulated.Rd'
  is.triangulated                   text    html    latex   example
Note: removing empty section \value in file 'isKuratowskiSubgraph.Rd'
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Note: removing empty section \examples in file 'isKuratowskiSubgraph.Rd'
  isKuratowskiSubgraph              text    html    latex
Note: removing empty section \value in file 'isStraightLineDrawing.Rd'
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Note: removing empty section \examples in file 'isStraightLineDrawing.Rd'
  isStraightLineDrawing             text    html    latex
Note: removing empty section \seealso in file 'isomorphism.Rd'
  isomorphism                       text    html    latex   example
Note: removing empty section \note in file 'johnson.all.pairs.sp.Rd'
  johnson.all.pairs.sp              text    html    latex   example
Note: removing empty section \seealso in file 'kCliques.Rd'
  kCliques                          text    html    latex   example
Note: removing empty section \seealso in file 'kCores.Rd'
  kCores                            text    html    latex   example
Note: removing empty section \value in file 'kolmogorovMaxFlow.Rd'
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  kolmogorovMaxFlow                 text    html    latex
Note: removing empty section \seealso in file 'lambdaSets.Rd'
  lambdaSets                        text    html    latex   example
  layout                            text    html    latex   example
Note: removing empty section \value in file 'lengauerTarjanDominatorTree.Rd'
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  lengauerTarjanDominatorTree       text    html    latex
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  makeBiconnectedPlanar             text    html    latex
Note: removing empty section \value in file 'makeConnected.Rd'
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  makeConnected                     text    html    latex
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  makeMaximalPlanar                 text    html    latex
Note: removing empty section \seealso in file 'maxClique.Rd'
  maxClique                         text    html    latex   example
  maxFlow                           text    html    latex   example
Note: removing empty section \value in file 'maximumCycleRatio.Rd'
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  maximumCycleRatio                 text    html    latex
  minCut                            text    html    latex   example
Note: removing empty section \value in file 'minimumCycleRatio.Rd'
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  minimumCycleRatio                 text    html    latex
  mstree.kruskal                    text    html    latex   example
  mstree.prim                       text    html    latex   example
Note: removing empty section \seealso in file 'ordering.Rd'
  ordering                          text    html    latex   example
Note: removing empty section \value in file 'planarCanonicalOrdering.Rd'
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  planarCanonicalOrdering           text    html    latex
Note: removing empty section \value in file 'planarFaceTraversal.Rd'
Note: removing empty section \details in file 'planarFaceTraversal.Rd'
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  planarFaceTraversal               text    html    latex
Note: removing empty section \seealso in file 'removeSelfLoops.Rd'
  removeSelfLoops                   text    html    latex   example
  separates                         text    html    latex   example
Note: removing empty section \value in file 'sloanStartEndVertices.Rd'
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  sloanStartEndVertices             text    html    latex
  sp.between                        text    html    latex   example
  strongComp                        text    html    latex   example
Note: removing empty section \seealso in file 'transClosure.Rd'
  transClosure                      text    html    latex   example
  transitivity                      text    html    latex   example
  tsort                             text    html    latex   example
  wavefront                         text    html    latex   example
** building package indices ...
* DONE (RBGL)
* creating vignettes ... OK
* cleaning src
* running cleanup
removing exploded boost header source...
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'RBGL_1.18.0.tar.gz'