EBImage 2.6.0
Gregoire Pau
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/EBImage | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/EBImage.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '2.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBImage-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBImage-manual.tex ... OK
* checking EBImage-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/EBImage.Rcheck
---------- Making package EBImage ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making EBImage.d from EBImage.c
making colors.d from colors.c
making conversions.d from conversions.c
making display.d from display.c
making drawable.d from drawable.c
making features_haralick.d from features_haralick.c
making features_hull.d from features_hull.c
making features_moments.d from features_moments.c
making features_zernike.d from features_zernike.c
making filters_distmap.d from filters_distmap.c
making filters_magick.d from filters_magick.c
making filters_morph.d from filters_morph.c
making filters_normalize.d from filters_normalize.c
making filters_thresh.d from filters_thresh.c
making frameDist.d from frameDist.c
making io.d from io.c
making objects.d from objects.c
making tools.d from tools.c
making filters_floodfill.d from filters_floodfill.cpp
making filters_propagate.d from filters_propagate.cpp
making filters_watershed.d from filters_watershed.cpp
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c EBImage.c -o EBImage.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c colors.c -o colors.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c conversions.c -o conversions.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c display.c -o display.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c drawable.c -o drawable.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c features_haralick.c -o features_haralick.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c features_hull.c -o features_hull.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c features_moments.c -o features_moments.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c features_zernike.c -o features_zernike.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c filters_distmap.c -o filters_distmap.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c filters_magick.c -o filters_magick.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c filters_morph.c -o filters_morph.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c filters_normalize.c -o filters_normalize.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c filters_thresh.c -o filters_thresh.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c frameDist.c -o frameDist.o
frameDist.c:27: warning: C99 inline functions are not supported; using GNU89
frameDist.c:27: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
frameDist.c:119: warning: C99 inline functions are not supported; using GNU89
frameDist.c:130: warning: C99 inline functions are not supported; using GNU89
frameDist.c:169: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c io.c -o io.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c objects.c -o objects.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -c tools.c -o tools.o
g++ -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O2 -Wall -c filters_floodfill.cpp -o filters_floodfill.o
g++ -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O2 -Wall -c filters_propagate.cpp -o filters_propagate.o
g++ -Ie:/biocbld/bbs-2.3-bioc/R/include -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O2 -Wall -c filters_watershed.cpp -o filters_watershed.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i EBImage_res.rc -o EBImage_res.o
g++ -shared -s -o EBImage.dll EBImage.def EBImage.o colors.o conversions.o display.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_magick.o filters_morph.o filters_normalize.o filters_thresh.o frameDist.o io.o objects.o tools.o filters_floodfill.o filters_propagate.o filters_watershed.o EBImage_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -shared -LC:/Progra~1/ImageMagick-6.4.4-Q16 -lCORE_RL_magick_ -lCORE_RL_wand_ -LC:/GTK/lib -lgtk-win32-2.0 -lgdk-win32-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangowin32-1.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -liconv -lgdi32 -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package EBImage for lazy loading
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'EBImage'
Formats: text html latex example chm
EBImage-deprecated text html latex chm
EBImage-package text html latex chm
Image.generic.methods text html latex chm
channel text html latex example chm
class.Image text html latex example chm
class.IndexedImage text html latex example chm
constructors text html latex example chm
denoising text html latex example chm
display text html latex example chm
distmap text html latex example chm
drawable text html latex example chm
enhancing text html latex chm
features-edge text html latex example chm
features-haralick text html latex example chm
features-hull text html latex example chm
features-moments text html latex example chm
features-zernike text html latex example chm
filter2 text html latex chm
floodfill text html latex example chm
frameDist text html latex chm
getFeatures text html latex example chm
input-output text html latex example chm
internals text html latex chm
matchObjects text html latex chm
morphology text html latex example chm
normalize text html latex example chm
paintObjects text html latex example chm
propagate text html latex example chm
rmObjects text html latex example chm
segmenting text html latex chm
stackObjects text html latex example chm
thresholding text html latex example chm
tile text html latex example chm
transformations text html latex chm
watershed text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\EBImage.Rcheck\00_pkg_src\EBImage\chm\EBImage.chm
Compile time: 0 minutes, 0 seconds
36 Topics
503 Local links
15 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\EBImage.Rcheck\00_pkg_src\EBImage\chm\EBImage.chm, 96,166 bytes
Compression decreased file by 140,354 bytes.
adding MD5 sums
* DONE (EBImage)