* checking for file 'Category/DESCRIPTION' ... OK
* preparing 'Category':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'Category' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: graph
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
>>> Building/Updating help pages for package 'Category'
Formats: text html latex example
ChrBandTree-class text html latex example
ChrMapHyperGParams-class text html latex example
ChrMapHyperGResult-class text html latex example
ChrMapLinearMParams-class text html latex example
ChrMapLinearMResult-class text html latex example
DatPkg-class text html latex example
GOHyperGParams-class text html latex
HyperGParams-class text html latex
Note: removing empty section \details in file 'HyperGResult-accessors.Rd'
HyperGResult-accessors text html latex example
HyperGResult-class text html latex
HyperGResultBase-class text html latex
KEGGHyperGParams-class text html latex
LinearMParams-class text html latex example
LinearMResult-class text html latex example
LinearMResultBase-class text html latex example
MAPAmat text html latex example
Note: ignoring empty \keyword entries in file 'NewChrBandTree.Rd'
NewChrBandTree text html latex
applyByCategory text html latex example
cateGOryMatrix text html latex example
categoryToEntrezBuilder text html latex
Note: ignoring empty \keyword entries in file 'cb_contingency.Rd'
cb_contingency text html latex
Note: ignoring empty \keyword entries in file 'cb_parse_band_Hs.Rd'
cb_parse_band_Hs text html latex example
Note: ignoring empty \keyword entries in file 'cb_parse_band_Mm.Rd'
cb_parse_band_Mm text html latex example
Note: ignoring empty \keyword entries in file 'cb_test.Rd'
cb_test text html latex
effectSize text html latex
Note: ignoring empty \keyword entries in file 'exampleLevels.Rd'
exampleLevels text html latex
findAMstats text html latex example
geneGoHyperGeoTest text html latex
geneKeggHyperGeoTest text html latex
getPathNames text html latex example
Note: ignoring empty \keyword entries in file 'gseattperm.Rd'
gseattperm text html latex example
hyperGTest text html latex
linearMTest text html latex
Note: removing empty section \examples in file 'local_test_factory.Rd'
local_test_factory text html latex
makeChrBandGraph text html latex example
makeEBcontr text html latex example
makeValidParams text html latex
probes2MAP text html latex example
probes2Path text html latex example
tree_visitor text html latex
ttperm text html latex example
universeBuilder text html latex
** building package indices ...
* DONE (Category)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Category_2.8.4.tar.gz'