CGHbase 1.0.0
Sjoerd Vosse
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/CGHbase | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/CGHbase.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'CGHbase/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CGHbase' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CGHbase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating CGHbase-Ex.R ... OK
* checking examples ... OK
* creating CGHbase-manual.tex ... OK
* checking CGHbase-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/CGHbase.Rcheck
---------- Making package CGHbase ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing data files
preparing package CGHbase for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: marray
Loading required package: limma
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'CGHbase'
Formats: text html latex example chm
CGHbase-package text html latex chm
WiltingCalled text html latex chm
WiltingData text html latex chm
WiltingNorm text html latex chm
WiltingRaw text html latex chm
WiltingRegions text html latex chm
WiltingSeg text html latex chm
avedist text html latex chm
chromosomes text html latex chm
class.cghCall text html latex example chm
class.cghRaw text html latex example chm
class.cghRegions text html latex example chm
class.cghSeg text html latex example chm
copynumber text html latex example chm
frequencyPlot text html latex example chm
plot text html latex chm
probloss text html latex chm
regions text html latex chm
summaryPlot text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\CGHbase.Rcheck\00_pkg_src\CGHbase\chm\CGHbase.chm
Compile time: 0 minutes, 11 seconds
20 Topics
151 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\CGHbase.Rcheck\00_pkg_src\CGHbase\chm\CGHbase.chm, 35,918 bytes
Compression decreased file by 60,133 bytes.
adding MD5 sums
* DONE (CGHbase)