ACME 1.8.0
Sean Davis
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ACME | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/ACME.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'ACME/DESCRIPTION' ... OK
* this is package 'ACME' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ACME' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findClosestGene: no visible binding for '<<-' assignment to 'refflat'
findClosestGene: no visible binding for global variable 'refflat'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating ACME-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ACME-manual.tex ... OK
* checking ACME-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/ACME.Rcheck
---------- Making package ACME ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making windowChisq.d from windowChisq.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58: warning: suggest parentheses around comparison in operand of &
windowChisq.c:63: warning: suggest parentheses around comparison in operand of &
windowChisq.c:21: warning: unused variable 'xa'
windowChisq.c: At top level:
windowChisq.c:86: warning: initialization from incompatible pointer type
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i ACME_res.rc -o ACME_res.o
gcc -std=gnu99 -shared -s -o ACME.dll ACME.def windowChisq.o ACME_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package ACME for lazy loading
Creating a new generic function for "print" in "ACME"
Creating a new generic function for "plot" in "ACME"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'ACME'
Formats: text html latex example chm
aGFF-class text html latex example chm
aGFFCalc-class text html latex example chm
do.aGFF.calc text html latex example chm
example.agff text html latex example chm
findClosestGene text html latex example chm
findRegions text html latex example chm
getRefflat text html latex example chm
read.resultsGFF text html latex example chm
write.sgr text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\ACME.Rcheck\00_pkg_src\ACME\chm\ACME.chm
Compile time: 0 minutes, 2 seconds
10 Topics
33 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\ACME.Rcheck\00_pkg_src\ACME\chm\ACME.chm, 26,473 bytes
Compression decreased file by 4,362 bytes.
adding MD5 sums
* DONE (ACME)