reb 1.13.0
Karl J. Dykema
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/reb | | Last Changed Rev: 29380 / Revision: 30951 | | Last Changed Date: 2008-01-04 05:00:43 -0800 (Fri, 04 Jan 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | [ ERROR ] | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | WARNINGS | OK |
* checking for file 'reb/DESCRIPTION' ... OK
* preparing 'reb':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'reb' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c movbin.c -o movbin.o
movbin.c: In function 'bcount':
movbin.c:37: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'bscore':
movbin.c:48: warning: implicit declaration of function 'sqrt'
movbin.c:48: warning: incompatible implicit declaration of built-in function 'sqrt'
movbin.c: In function 'mean':
movbin.c:63: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'mspan_mov_binom_mx':
movbin.c:128: warning: unused variable 'im_mx'
movbin.c: In function 'mspan_mov_binom':
movbin.c:145: warning: unused variable 'c'
movbin.c:145: warning: unused variable 'r'
movbin.c: In function 'main':
movbin.c:168: warning: unused variable 'nr'
movbin.c:166: warning: unused variable 'rlen'
movbin.c:163: warning: unused variable 'range'
movbin.c:162: warning: unused variable 'sum_mx'
movbin.c:162: warning: unused variable 'sum_vec'
movbin.c:161: warning: unused variable 'im_mx'
movbin.c:161: warning: unused variable 'im_vec'
movbin.c:160: warning: unused variable 'gx2'
movbin.c:158: warning: unused variable 'data'
gcc -std=gnu99 -shared -L/usr/local/lib -o reb.so movbin.o -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** help
Note: removing empty section \value
Note: removing empty section \note
Note: unmatched right brace in 'regmap' on or after line 15
Note: removing empty section \value
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \note
>>> Building/Updating help pages for package 'reb'
Formats: text html latex example
Hs.arms text html latex
absMax text html latex example
buildChromCytoband text html latex example
buildChromMap text html latex example
cset2band text html latex example
fromRevIsh text html latex example
isAbnormal text html latex example
mcr.eset text html latex example
movbin text html latex example
movt text html latex example
naMean text html latex example
regmap text html latex example
revish text html latex example
rmAmbigMappings text html latex example
smoothByRegion text html latex example
summarizeByRegion text html latex example
tBinomTest text html latex example
writeGFF3 text html latex example
** building package indices ...
* DONE (reb)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: idiogram
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: plotrix
Error: processing vignette 'reb.Rnw' failed with diagnostics:
chunk 1
Error : package 'plotrix' could not be loaded
In addition: Warning message:
In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
there is no package called 'plotrix'
Execution halted