gaga 0.0.1
David Rossell
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gaga | | Last Changed Rev: 30639 / Revision: 30951 | | Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | WARNINGS | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL gaga_0.0.1.tar.gz'
* Installing to library 'gaga.buildbin-libdir'
* Installing *source* package 'gaga' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c cseqdesma.c -o cseqdesma.o
cseqdesma.c: In function 'fit_ggC':
cseqdesma.c:1019: warning: unused variable 'malpha0'
cseqdesma.c: In function 'expected_fp':
cseqdesma.c:1667: warning: unused variable 'eps'
cseqdesma.c:1667: warning: unused variable 'err'
cseqdesma.c:1665: warning: unused variable 'interval'
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: unused variable 'zero'
cseqdesma.c:2869: warning: unused variable 'one'
cseqdesma.c:2869: warning: unused variable 'nobs'
cseqdesma.c:2869: warning: unused variable 'prodpat'
cseqdesma.c:2869: warning: unused variable 'sumpat'
cseqdesma.c:2869: warning: unused variable 'nx'
cseqdesma.c:2869: warning: unused variable 'px'
cseqdesma.c:2869: warning: unused variable 'sx'
cseqdesma.c:2867: warning: unused variable 'group'
cseqdesma.c:4199:1: warning: "/*" within comment
cseqdesma.c:4243:1: warning: "/*" within comment
cseqdesma.c:4295:1: warning: "/*" within comment
cseqdesma.c:4341:1: warning: "/*" within comment
cseqdesma.c: In function 'sampleclas_ggC':
cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpred_ggC':
cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpar_ggC':
cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simnewsamples_ggC':
cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: 'r0' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c cstat.c -o cstat.o
cstat.c: In function 'ludc':
cstat.c:1017: warning: 'imax' may be used uninitialized in this function
cstat.c: In function 'lu_det':
cstat.c:1124: warning: 'indx' is used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c cseqdesma.c -o cseqdesma.o
cseqdesma.c: In function 'fit_ggC':
cseqdesma.c:1019: warning: unused variable 'malpha0'
cseqdesma.c: In function 'expected_fp':
cseqdesma.c:1667: warning: unused variable 'eps'
cseqdesma.c:1667: warning: unused variable 'err'
cseqdesma.c:1665: warning: unused variable 'interval'
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: unused variable 'zero'
cseqdesma.c:2869: warning: unused variable 'one'
cseqdesma.c:2869: warning: unused variable 'nobs'
cseqdesma.c:2869: warning: unused variable 'prodpat'
cseqdesma.c:2869: warning: unused variable 'sumpat'
cseqdesma.c:2869: warning: unused variable 'nx'
cseqdesma.c:2869: warning: unused variable 'px'
cseqdesma.c:2869: warning: unused variable 'sx'
cseqdesma.c:2867: warning: unused variable 'group'
cseqdesma.c:4199:1: warning: "/*" within comment
cseqdesma.c:4243:1: warning: "/*" within comment
cseqdesma.c:4295:1: warning: "/*" within comment
cseqdesma.c:4341:1: warning: "/*" within comment
cseqdesma.c: In function 'sampleclas_ggC':
cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpred_ggC':
cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpar_ggC':
cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simnewsamples_ggC':
cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: 'r0' may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c cstat.c -o cstat.o
cstat.c: In function 'ludc':
cstat.c:1017: warning: 'imax' may be used uninitialized in this function
cstat.c: In function 'lu_det':
cstat.c:1124: warning: 'indx' is used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c cseqdesma.c -o cseqdesma.o
cseqdesma.c: In function 'fit_ggC':
cseqdesma.c:1019: warning: unused variable 'malpha0'
cseqdesma.c: In function 'expected_fp':
cseqdesma.c:1667: warning: unused variable 'eps'
cseqdesma.c:1667: warning: unused variable 'err'
cseqdesma.c:1665: warning: unused variable 'interval'
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: unused variable 'zero'
cseqdesma.c:2869: warning: unused variable 'one'
cseqdesma.c:2869: warning: unused variable 'nobs'
cseqdesma.c:2869: warning: unused variable 'prodpat'
cseqdesma.c:2869: warning: unused variable 'sumpat'
cseqdesma.c:2869: warning: unused variable 'nx'
cseqdesma.c:2869: warning: unused variable 'px'
cseqdesma.c:2869: warning: unused variable 'sx'
cseqdesma.c:2867: warning: unused variable 'group'
cseqdesma.c:4199:1: warning: "/*" within comment
cseqdesma.c:4243:1: warning: "/*" within comment
cseqdesma.c:4295:1: warning: "/*" within comment
cseqdesma.c:4341:1: warning: "/*" within comment
cseqdesma.c: In function 'sampleclas_ggC':
cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpred_ggC':
cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpar_ggC':
cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simnewsamples_ggC':
cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: 'r0' may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c cstat.c -o cstat.o
cstat.c: In function 'ludc':
cstat.c:1017: warning: 'imax' may be used uninitialized in this function
cstat.c: In function 'lu_det':
cstat.c:1124: warning: 'indx' is used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
>>> Building/Updating help pages for package 'gaga'
Formats: text html latex example
checkfit text html latex
classpred text html latex example
dcgamma text html latex
findgenes text html latex example
fit.gg text html latex example
getpar text html latex
parest text html latex example
powclasspred text html latex
print.gagafit text html latex
sim.gg text html latex example
simnewsamples text html latex
** building package indices ...
* DONE (gaga)