BioC 2.2: CHECK report for Ruuid on wellington

Package: Ruuid

Version: 1.17.1

Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check Ruuid_1.17.1.tar.gz

StartedAt: 2008-04-09 10:32:29 -0700 (Wed, 09 Apr 2008)

EndedAt: 2008-04-09 10:33:05 -0700 (Wed, 09 Apr 2008)

EllapsedTime: 36.0 seconds

RetCode: 0

Status: OK

CheckDir: Ruuid.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/Ruuid.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'Ruuid/DESCRIPTION' ... OK
* this is package 'Ruuid' version '1.17.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Ruuid' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Ruuid-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Ruuid-manual.tex ... OK
* checking Ruuid-manual.tex using pdflatex ... OK

* Installing *source* package 'Ruuid' ...
checking for pkg-config... /usr/bin/pkg-config
checking for glib-config... /usr/bin/glib-config
checking for glib-2.0... yes
checking PKG_CFLAGS... -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include  
checking PKG_LIBS... -lglib-2.0  
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking /usr/include/unistd.h usability... yes
checking /usr/include/unistd.h presence... yes
checking for /usr/include/unistd.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c clear.c -o clear.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from clear.c:14:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from clear.c:14:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c compare.c -o compare.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from compare.c:14:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from compare.c:14:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c copy.c -o copy.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from copy.c:12:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from copy.c:12:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c gen_uuid.c -o gen_uuid.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from gen_uuid.c:36:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from gen_uuid.c:36:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c isnull.c -o isnull.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from isnull.c:12:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from isnull.c:12:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c pack.c -o pack.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from pack.c:13:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from pack.c:13:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c parse.c -o parse.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from parse.c:17:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from parse.c:17:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c Rinit.c -o Rinit.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from Ruuid.h:5,
                 from Rinit.c:1:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from Ruuid.h:5,
                 from Rinit.c:1:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c Ruuid.c -o Ruuid.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from Ruuid.h:5,
                 from Ruuid.c:17:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from Ruuid.h:5,
                 from Ruuid.c:17:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c unpack.c -o unpack.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from unpack.c:13:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from unpack.c:13:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c unparse.c -o unparse.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from unparse.c:14:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from unparse.c:14:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c uuid_time.c -o uuid_time.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from uuid_time.c:21:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from uuidP.h:33,
                 from uuid_time.c:21:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -shared -L/usr/local/lib -o Ruuid.so clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o Rinit.o Ruuid.o unpack.o unparse.o uuid_time.o -lglib-2.0    -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'Ruuid'
     Formats: text html latex example 
  Ruuid-class                       text    html    latex   example
  getuuid                           text    html    latex   example
  uuidt-class                       text    html    latex   example
** building package indices ...
* DONE (Ruuid)

Command output