DNAcopy 1.13.3
Venkatraman E. Seshan
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DNAcopy | | Last Changed Rev: 30639 / Revision: 30951 | | Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | [ OK ] | OK | OK |
* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'DNAcopy' ...
** libs
** arch - i386
gfortran-4.2 -arch i386 -fPIC -g -O2 -march=nocona -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:163: warning: 'tmaxi' may be used uninitialized in this function
changepoints.f:163: warning: 'tmaxj' may be used uninitialized in this function
changepoints.f:163: warning: 'sxmxi' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -march=nocona -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -march=nocona -Wall -c hybcpt.f -o hybcpt.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -march=nocona -Wall -c prune.f -o prune.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -march=nocona -Wall -c segmentp.f -o segmentp.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:163: warning: 'tmaxi' may be used uninitialized in this function
changepoints.f:163: warning: 'tmaxj' may be used uninitialized in this function
changepoints.f:163: warning: 'sxmxi' may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c hybcpt.f -o hybcpt.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c segmentp.f -o segmentp.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.1 -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:163: warning: 'tmaxj' may be used uninitialized in this function
changepoints.f:163: warning: 'sxmxi' may be used uninitialized in this function
changepoints.f:163: warning: 'tmaxi' may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c hybcpt.f -o hybcpt.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c segmentp.f -o segmentp.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'DNAcopy'
Formats: text html latex example
CNA text html latex example
DNAcopy-internal text html latex
DNAcopy text html latex
coriell text html latex
cytoBand text html latex
getbdry text html latex
plot.DNAcopy text html latex example
segment text html latex example
segments.p text html latex example
segments.summary text html latex example
smooth.CNA text html latex example
subset.CNA text html latex example
subset.DNAcopy text html latex
** building package indices ...
* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.13.3.tar.gz'