vsn 3.4.1
Wolfgang Huber
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/vsn | | Last Changed Rev: 28963 / Revision: 29143 | | Last Changed Date: 2007-11-29 03:23:05 -0800 (Thu, 29 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/vsn.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'vsn/DESCRIPTION' ... OK
* this is package 'vsn' version '3.4.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'vsn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating vsn-Ex.R ... OK
* checking examples ... WARNING
Found the following significant warnings:
Warning: The function 'vsn' is deprecated.
Warning: The function 'vsn' is deprecated.
Deprecated functions may be defunct as soon as of the next release of R.
See ?Deprecated.
* checking package vignettes in 'inst/doc' ... OK
* creating vsn-manual.tex ... OK
* checking vsn-manual.tex ... OK
WARNING: There was 1 warning, see
D:/biocbld/bbs-2.2-bioc/meat/vsn.Rcheck/00check.log
for details
installing R.css in D:/biocbld/bbs-2.2-bioc/meat/vsn.Rcheck
---------- Making package vsn ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making init.d from init.c
making vsn.d from vsn.c
making vsn2.d from vsn2.c
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c init.c -o init.o
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c vsn.c -o vsn.o
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c vsn2.c -o vsn2.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include -i vsn_res.rc -o vsn_res.o
gcc -std=gnu99 -shared -s -o vsn.dll vsn.def init.o vsn.o vsn2.o vsn_res.o -Ld:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package vsn for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Creating a new generic function for "logLik" in "vsn"
Creating a new generic function for "coef" in "vsn"
Creating a new generic function for "coefficients" in "vsn"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'vsn'
Formats: text html latex example chm
class.vsn text html latex example chm
class.vsnInput text html latex chm
getIntensityMatrix text html latex example chm
justvsn text html latex example chm
kidney text html latex example chm
lymphoma text html latex example chm
meanSdPlot text html latex example chm
normalize.AffyBatch.vsn text html latex example chm
sagmbSimulateData text html latex example chm
scalingFactorTransformation text html latex example chm
vsn-package text html latex chm
vsn text html latex example chm
vsn2 text html latex example chm
vsn2trsf text html latex example chm
vsnLikelihood text html latex example chm
vsnPlotPar text html latex example chm
vsnh text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.2-bioc\meat\vsn.Rcheck\00_pkg_src\vsn\chm\vsn.chm
Compile time: 0 minutes, 0 seconds
18 Topics
134 Local links
14 Internet links
1 Graphic
Created d:\biocbld\bbs-2.2-bioc\meat\vsn.Rcheck\00_pkg_src\vsn\chm\vsn.chm, 53,452 bytes
Compression decreased file by 42,977 bytes.
adding MD5 sums
* DONE (vsn)