timecourse 1.11.0
Yu Chuan Tai
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/timecourse | | Last Changed Rev: 28301 / Revision: 29143 | | Last Changed Date: 2007-10-29 18:15:54 -0700 (Mon, 29 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/timecourse.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'timecourse/DESCRIPTION' ... OK
* this is package 'timecourse' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'timecourse' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mb.2D : <anonymous>: no visible binding for global variable ‘n’
mb.2D : <anonymous>: no visible binding for global variable ‘T1’
mb.2D : <anonymous>: no visible binding for global variable ‘xbar’
mb.2D : <anonymous>: no visible binding for global variable ‘modS1’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating timecourse-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './timecourse.tex' ...
Package natbib Warning: Citation `TaiSpeed2006' on page 1 undefined on input li
Package natbib Warning: Citation `Taithesis2005' on page 1 undefined on input l
Package natbib Warning: Citation `TaiSpeed2006' on page 1 undefined on input li
Package natbib Warning: Citation `Taithesis2005' on page 1 undefined on input l
Package natbib Warning: Citation `TaiSpeed2006' on page 1 undefined on input li
Package natbib Warning: Citation `Tai2005' on page 1 undefined on input line 65
Package natbib Warning: Citation `Taithesis2005' on page 1 undefined on input l
Package natbib Warning: Citation `Smyth2004' on page 1 undefined on input line
Package natbib Warning: Citation `Smyth2005' on page 1 undefined on input line
Package natbib Warning: Citation `Tomancak2002' on page 1 undefined on input li
Package natbib Warning: Citation `Irizarry2003' on page 2 undefined on input li
Package natbib Warning: Citation `Bolstad2003' on page 2 undefined on input lin
Package natbib Warning: Citation `Huber1981' on page 5 undefined on input line
Package natbib Warning: Citation `Fox2002' on page 5 undefined on input line 32
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './timecourse.tex' ...
Package natbib Warning: Citation `TaiSpeed2006' on page 1 undefined on input li
Package natbib Warning: Citation `Taithesis2005' on page 1 undefined on input l
Package natbib Warning: Citation `TaiSpeed2006' on page 2 undefined on input li
Package natbib Warning: Citation `Taithesis2005' on page 2 undefined on input l
Package natbib Warning: Citation `TaiSpeed2006' on page 2 undefined on input li
Package natbib Warning: Citation `Tai2005' on page 2 undefined on input line 65
Package natbib Warning: Citation `Taithesis2005' on page 2 undefined on input l
Package natbib Warning: Citation `Smyth2004' on page 2 undefined on input line
Package natbib Warning: Citation `Smyth2005' on page 2 undefined on input line
Package natbib Warning: Citation `Tomancak2002' on page 2 undefined on input li
Package natbib Warning: Citation `Irizarry2003' on page 2 undefined on input li
Package natbib Warning: Citation `Bolstad2003' on page 2 undefined on input lin
Package natbib Warning: Citation `Huber1981' on page 6 undefined on input line
Package natbib Warning: Citation `Fox2002' on page 6 undefined on input line 32
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './timecourse.tex' ...
* creating timecourse-manual.tex ... OK
* checking timecourse-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/timecourse.Rcheck
* Installing *source* package 'timecourse' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: limma
Loading required package: MASS
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
>>> Building/Updating help pages for package 'timecourse'
Formats: text html latex example
abs2ratio text html latex
fruitfly text html latex
marrayTC-class text html latex
matrix.cov text html latex
mb.MANOVA text html latex example
mb.long text html latex example
ot.helmert text html latex
plotProfile text html latex
univ.func text html latex
** building package indices ...
* DONE (timecourse)