stam 1.7.1
Claudio Lottaz
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/stam | | Last Changed Rev: 28490 / Revision: 29143 | | Last Changed Date: 2007-11-06 01:05:01 -0800 (Tue, 06 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for file 'stam/DESCRIPTION' ... OK
* preparing 'stam':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst332895489
---------- Making package stam ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making util.d from util.c
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c util.c -o util.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i stam_res.rc -o stam_res.o
gcc-sjlj -std=gnu99 -shared -s -o stam.dll stam.def util.o stam_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package stam for lazy loading
Loading required package: GO
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: pamr
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: annaffy
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: KEGG
installing man source files
installing indices
Warning: 'golubTrain.cv' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'golubTrain.fit' looks like a pre-2.4.0 S4 object: please recreate it
not zipping data
installing help
Note: unmatched right brace in 'golubTrain.cv' on or after line 10
Note: unmatched right brace in 'golubTrain.cv.Rd' on or after line 10
Note: unmatched right brace in 'golubTrain.fit' on or after line 10
Note: unmatched right brace in 'golubTrain.fit.Rd' on or after line 10
Note: unmatched right brace in 'stamPrediction-class' on or after line 52
Note: unmatched right brace in 'stamPrediction-class.Rd' on or after line 52
>>> Building/Updating help pages for package 'stam'
Formats: text html latex example chm
golubTrain.cv text html latex chm
golubTrain.fit text html latex chm
image.stamPrediction text html latex chm
plot.stamCV text html latex chm
plot.stamFit text html latex chm
plot.stamPrediction text html latex chm
stam-internal text html latex chm
stam.cv text html latex example chm
stam.evaluate text html latex example chm
stam.fit text html latex example chm
stam.graph.plot text html latex chm
stam.net text html latex example chm
stam.predict text html latex example chm
stam.rgb.colors text html latex example chm
stam.serve text html latex example chm
stam.writeHTML text html latex example chm
stamCV-class text html latex chm
stamEval-class text html latex chm
stamFit-class text html latex chm
stamINode-class text html latex chm
stamLeaf-class text html latex chm
stamNet-class text html latex chm
stamNode-class text html latex chm
stamPrediction-class text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\stam\chm\stam.chm
Compile time: 0 minutes, 1 second
25 Topics
128 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\stam\chm\stam.chm, 54,519 bytes
Compression decreased file by 70,164 bytes.
adding MD5 sums
* DONE (stam)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO
Loading required package: pamr
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: annaffy
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: KEGG
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: hu6800
Error: processing vignette 'tr_2004_03.Rnw' failed with diagnostics:
chunk 4
Error in as.environment(pos) : invalid object for 'as.environment'
Execution halted