sscore 1.11.0
Richard Kennedy
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sscore | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/sscore.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'sscore/DESCRIPTION' ... OK
* this is package 'sscore' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sscore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
computeAffxSFandSDT: no visible binding for global variable ‘logI’
computeSFandSDT: no visible binding for global variable ‘logI’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating sscore-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './sscore.tex' ...
Package natbib Warning: Citation `zhang2002' on page 2 undefined on input line
Package natbib Warning: Citation `kerns2003' on page 2 undefined on input line
Package natbib Warning: Citation `kennedy2006' on page 2 undefined on input lin
Package natbib Warning: Citation `kennedy2006b' on page 2 undefined on input li
Package natbib Warning: Citation `affy:tech:2002' on page 10 undefined on input
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './sscore.tex' ...
Package natbib Warning: Citation `zhang2002' on page 2 undefined on input line
Package natbib Warning: Citation `kerns2003' on page 2 undefined on input line
Package natbib Warning: Citation `kennedy2006' on page 2 undefined on input lin
Package natbib Warning: Citation `kennedy2006b' on page 2 undefined on input li
Package natbib Warning: Citation `affy:tech:2002' on page 10 undefined on input
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './sscore.tex' ...
* creating sscore-manual.tex ... OK
* checking sscore-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/sscore.Rcheck
* Installing *source* package 'sscore' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio
Loading required package: preprocessCore
** help
>>> Building/Updating help pages for package 'sscore'
Formats: text html latex example
OneStepBiweightAlgorithm text html latex
SScore text html latex example
SScoreBatch text html latex example
computeAffxRawQ text html latex
computeAffxSFandSDT text html latex example
computeOutlier text html latex example
computeRawQ text html latex
computeSFandSDT text html latex example
computeZoneIInfo text html latex
computeZonenoise text html latex
trimMean text html latex
** building package indices ...
* DONE (sscore)