seqLogo 1.5.0
Oliver Bembom
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/seqLogo | | Last Changed Rev: 28473 / Revision: 29143 | | Last Changed Date: 2007-11-05 11:17:44 -0800 (Mon, 05 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/seqLogo.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'seqLogo/DESCRIPTION' ... OK
* this is package 'seqLogo' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'seqLogo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating seqLogo-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './seqLogo.tex' ...
Package natbib Warning: Citation `Schneider86' on page 1 undefined on input lin
Package natbib Warning: Citation `Schneider90' on page 1 undefined on input lin
Package natbib Warning: Citation `Schneider86' on page 3 undefined on input lin
Package natbib Warning: Citation `Chambers' on page 3 undefined on input line 2
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './seqLogo.tex' ...
* creating seqLogo-manual.tex ... OK
* checking seqLogo-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/seqLogo.Rcheck
* Installing *source* package 'seqLogo' ...
** R
** inst
** preparing package for lazy loading
Loading required package: grid
Creating a new generic function for "plot" in "seqLogo"
Creating a new generic function for "summary" in "seqLogo"
Creating a new generic function for "print" in "seqLogo"
** help
Note: removing empty section \details
Note: removing empty section \seealso
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \examples
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \seealso
>>> Building/Updating help pages for package 'seqLogo'
Formats: text html latex example
makePWM text html latex example
pwm-class text html latex
seqLogo text html latex example
** building package indices ...
* DONE (seqLogo)