rama 1.12.0
Raphael Gottardo
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rama | | Last Changed Rev: 29127 / Revision: 29143 | | Last Changed Date: 2007-12-10 08:46:24 -0800 (Mon, 10 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/rama.buildbin-libdir
Using auto-selected zip options 'rama-ZIPDATA=zip'
---------- Making package rama ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making estimation_slice.d from estimation_slice.c
making ex_estimation_slice.d from ex_estimation_slice.c
making mean.sd.d from mean.sd.c
making reorder.d from reorder.c
making util.d from util.c
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function 'mcmc_shift':
estimation_slice.c:122: warning: unused variable 'SSeps_sd_new'
estimation_slice.c:121: warning: unused variable 'SSeps_sd'
estimation_slice.c:117: warning: unused variable 'pi'
estimation_slice.c:116: warning: unused variable 'SS12'
estimation_slice.c:116: warning: unused variable 'SSR2'
estimation_slice.c:116: warning: unused variable 'SSR1'
estimation_slice.c:115: warning: unused variable 'dens_epsilon_new'
estimation_slice.c:115: warning: unused variable 'dens_epsilon'
estimation_slice.c:114: warning: unused variable 'l_epsilon_new'
estimation_slice.c:114: warning: unused variable 'l_epsilon'
estimation_slice.c:113: warning: unused variable 'lambda_eps2_new'
estimation_slice.c:113: warning: unused variable 'lambda_eps1_new'
estimation_slice.c: In function 'slice_sampling_lambda_eps':
estimation_slice.c:484: warning: suggest parentheses around comparison in operand of &
estimation_slice.c:493: warning: suggest parentheses around comparison in operand of &
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function 'mcmc':
ex_estimation_slice.c:144: warning: unused variable 'old_a'
ex_estimation_slice.c:143: warning: unused variable 'old_b'
ex_estimation_slice.c:138: warning: unused variable 'sum_res2'
ex_estimation_slice.c:137: warning: unused variable 'sum_res1'
ex_estimation_slice.c:119: warning: unused variable 'dens_t_new'
ex_estimation_slice.c:119: warning: unused variable 'dens_t'
ex_estimation_slice.c:112: warning: unused variable 'pi'
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c mean.sd.c -o mean.sd.o
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c reorder.c -o reorder.o
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c util.c -o util.o
util.c: In function 'product_mat_vec':
util.c:574: warning: unused variable 'k'
util.c: In function 'slice_sampling_a':
util.c:629: warning: suggest parentheses around comparison in operand of |
util.c:629: warning: suggest parentheses around comparison in operand of &
util.c:636: warning: suggest parentheses around comparison in operand of &
util.c:643: warning: suggest parentheses around comparison in operand of &
util.c:613: warning: unused variable 'v'
util.c: In function 'slice_sampling_b':
util.c:703: warning: suggest parentheses around comparison in operand of |
util.c:703: warning: suggest parentheses around comparison in operand of &
util.c:710: warning: suggest parentheses around comparison in operand of &
util.c:717: warning: suggest parentheses around comparison in operand of &
util.c:686: warning: unused variable 'v'
util.c: In function 'slice_sampling_b2':
util.c:767: warning: suggest parentheses around comparison in operand of &
util.c:775: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a2':
util.c:822: warning: suggest parentheses around comparison in operand of &
util.c:830: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_rho':
util.c:876: warning: suggest parentheses around comparison in operand of |
util.c:876: warning: suggest parentheses around comparison in operand of &
util.c:883: warning: suggest parentheses around comparison in operand of &
util.c:890: warning: suggest parentheses around comparison in operand of &
util.c:860: warning: unused variable 'v'
util.c: In function 'slice_sampling_rho2':
util.c:935: warning: suggest parentheses around comparison in operand of &
util.c:944: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_shift':
util.c:1019: warning: suggest parentheses around comparison in operand of |
util.c:1019: warning: suggest parentheses around comparison in operand of &
util.c:1026: warning: suggest parentheses around comparison in operand of &
util.c:1033: warning: suggest parentheses around comparison in operand of &
util.c:1000: warning: unused variable 'v'
util.c: In function 'slice_sampling_shift2':
util.c:1100: warning: suggest parentheses around comparison in operand of &
util.c:1108: warning: suggest parentheses around comparison in operand of &
util.c:1082: warning: unused variable 'v'
util.c: In function 'slice_sampling_p':
util.c:1248: warning: suggest parentheses around comparison in operand of &
util.c:1256: warning: suggest parentheses around comparison in operand of &
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.2-bioc/R/include -i rama_res.rc -o rama_res.o
gcc-sjlj -std=gnu99 -shared -s -o rama.dll rama.def estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o rama_res.o -LE:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
zipping data
installing help
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \details
>>> Building/Updating help pages for package 'rama'
Formats: text html latex example chm
arrange.row text html latex example chm
est.shift text html latex example chm
fit.model text html latex example chm
hiv text html latex chm
is.row.na text html latex example chm
ls.effect text html latex example chm
mat.mean text html latex example chm
ratio.plot text html latex example chm
weight.plot text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5360\rama\chm\rama.chm
Compile time: 0 minutes, 0 seconds
10 Topics
18 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5360\rama\chm\rama.chm, 28,449 bytes
Compression decreased file by 9,636 bytes.
adding MD5 sums
packaged installation of package 'rama' as rama_1.12.0.zip
* DONE (rama)