ppiStats 1.5.6
Tony Chiang
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ppiStats | | Last Changed Rev: 28974 / Revision: 29143 | | Last Changed Date: 2007-11-29 15:20:52 -0800 (Thu, 29 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | [ OK ] | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | ERROR |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | ERROR | ERROR |
* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/ppiStats.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-18 r43497)
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.5.6'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
estimatePPIErrorRates: no visible binding for global variable
'interactionEntrys'
estimatePPIErrorRates: no visible binding for global variable
'data2BRemoved'
estimatePPIErrorRates: no visible binding for global variable 'b2pall'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... OK
* creating ppiStats-manual.tex ... OK
* checking ppiStats-manual.tex ... OK
* Installing *source* package 'ppiStats' ...
** R
** inst
** preparing package for lazy loading
Loading required package: GO
Loading required package: GOstats
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RSQLite
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: YEAST
Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: grid
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Loading required package: ScISI
Loading required package: apComplex
Loading required package: Rintact
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: hypergraph
** help
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \references
Note: removing empty section \examples
>>> Building/Updating help pages for package 'ppiStats'
Formats: text html latex example
assessSymmetry text html latex example
bpMatrix text html latex example
calcInOutDegStats text html latex example
degreeEstimates text html latex example
estErrProbMethodOfMoments text html latex example
estimateCCMErrorRates text html latex example
genBPGraph text html latex example
hgParams text html latex
hgTests text html latex
idProteinErrorType text html latex example
idProteinType text html latex example
nullDistDoublyTestedEdges text html latex example
twPERM text html latex example
** building package indices ...
* DONE (ppiStats)