plw 0.99.2
Magnus Astrand
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/plw | | Last Changed Rev: 29054 / Revision: 29143 | | Last Changed Date: 2007-12-05 15:29:37 -0800 (Wed, 05 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/plw.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'plw/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'plw' version '0.99.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plw' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating plw-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './HowToPLW.tex' ...
Package natbib Warning: Citation `Astrand:2007c' on page 1 undefined on input l
Package natbib Warning: Citation `Astrand:2007c' on page 1 undefined on input l
Package natbib Warning: Citation `Kristiansson:2005' on page 1 undefined on inp
Package natbib Warning: Citation `Kristiansson:2006' on page 1 undefined on inp
Package natbib Warning: Citation `Sjogren:2007' on page 1 undefined on input li
Package natbib Warning: Citation `Astrand:2007b' on page 1 undefined on input l
Package natbib Warning: Citation `Cope:2004' on page 1 undefined on input line
Package natbib Warning: Citation `Astrand:2007c' on page 3 undefined on input l
Package natbib Warning: Citation `Astrand:2007c' on page 9 undefined on input l
Package natbib Warning: Citation `Callow:2000' on page 9 undefined on input lin
Package natbib Warning: Citation `Callow:2000' on page 9 undefined on input lin
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './HowToPLW.tex' ...
* creating plw-manual.tex ... OK
* checking plw-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/plw.Rcheck
* Installing *source* package 'plw' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c SpecialFunctions.c -o SpecialFunctions.o
SpecialFunctions.c: In function ‘getPosteriorMeansAndOdds’:
SpecialFunctions.c:20: warning: unused variable ‘j’
SpecialFunctions.c: In function ‘order_stat_by_index’:
SpecialFunctions.c:565: warning: suggest parentheses around comparison in operand of &
SpecialFunctions.c: In function ‘median_by_index’:
SpecialFunctions.c:594: warning: suggest parentheses around comparison in operand of &
SpecialFunctions.c: In function ‘mad_by_index’:
SpecialFunctions.c:616: warning: suggest parentheses around comparison in operand of &
SpecialFunctions.c: In function ‘mean_by_index’:
SpecialFunctions.c:639: warning: suggest parentheses around comparison in operand of &
SpecialFunctions.c: In function ‘sd_by_index’:
SpecialFunctions.c:662: warning: suggest parentheses around comparison in operand of &
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c SpecialOptim.c -o SpecialOptim.o
SpecialOptim.c:10: warning: ‘matrix’ defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib -o plw.so SpecialFunctions.o SpecialOptim.o -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MASS
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: splines
** help
>>> Building/Updating help pages for package 'plw'
Formats: text html latex example
AffySpikeU95Subset text html latex
estimateMVbeta text html latex
estimateSigma text html latex
estimateSigmaMV text html latex
estimateSigmaMVbeta text html latex
getKnots text html latex
lmw text html latex example
logitT text html latex example
plw-package text html latex
plw text html latex example
scaleParameterPlot text html latex example
statByIndex text html latex example
topRankSummary text html latex example
varHistPlot text html latex example
** building package indices ...
* DONE (plw)