pdmclass 1.11.0
James W. MacDonald
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pdmclass | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/pdmclass.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'pdmclass/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pdmclass' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pdmclass' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
pdmGenes: no visible binding for global variable ‘response’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating pdmclass-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './pdmclass.tex' ...
Package natbib Warning: Citation `hastie:1994' on page 1 undefined on input lin
Package natbib Warning: Citation `ghosh:2003' on page 1 undefined on input line
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './pdmclass.tex' ...
Package natbib Warning: Citation `hastie:1994' on page 1 undefined on input lin
Package natbib Warning: Citation `ghosh:2003' on page 1 undefined on input line
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './pdmclass.tex' ...
* creating pdmclass-manual.tex ... OK
* checking pdmclass-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/pdmclass.Rcheck
* Installing *source* package 'pdmclass' ...
** R
** inst
** help
>>> Building/Updating help pages for package 'pdmclass'
Formats: text html latex example
my.svd text html latex
pdmClass text html latex example
pdmClass.cv text html latex example
pdmGenes text html latex example
pls1c text html latex
predict.pls text html latex example
svdpls1c text html latex
svdr text html latex
** building package indices ...
* DONE (pdmclass)