pairseqsim 1.9.3
Witold Wolski
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pairseqsim | | Last Changed Rev: 25301 / Revision: 29143 | | Last Changed Date: 2007-06-10 10:22:32 -0700 (Sun, 10 Jun 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst531287792
---------- Making package pairseqsim ------------
adding build stamp to DESCRIPTION
making DLL ...
making align.d from align.c
making basic.d from basic.c
making callalign.d from callalign.c
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c align.c -o align.o
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c basic.c -o basic.o
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c callalign.c -o callalign.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include -i pairseqsim_res.rc -o pairseqsim_res.o
gcc -std=gnu99 -shared -s -o pairseqsim.dll pairseqsim.def align.o basic.o callalign.o pairseqsim_res.o -Ld:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
Note: removing empty section \seealso
Note: removing empty section \seealso
Note: removing empty section \details
Note: removing empty section \details
Note: unmatched right brace in 'EPAM110' on or after line 80
Note: removing empty section \format
Note: unmatched right brace in 'EPAM110.Rd' on or after line 80
Note: removing empty section \format
Note: unmatched right brace in 'Submatrix-class' on or after line 14
Note: unmatched right brace in 'Submatrix-class.Rd' on or after line 14
Note: removing empty section \details
Note: removing empty section \format
Note: removing empty section \details
Note: removing empty section \format
>>> Building/Updating help pages for package 'pairseqsim'
Formats: text html latex example chm
AAAlignment-class text html latex example chm
AAAlphabet-class text html latex example chm
AASequence-class text html latex example chm
AASequence text html latex example chm
AASequenceList-class text html latex example chm
EPAM110 text html latex example chm
Submatrix-class text html latex chm
listdist-methods text html latex chm
readFasta-methods text html latex example chm
salign-methods text html latex example chm
sequlist text html latex example chm
testalign-methods text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.2-bioc\meat\pairseqsim\chm\pairseqsim.chm
Compile time: 0 minutes, 0 seconds
13 Topics
129 Local links
11 Internet links
1 Graphic
Created d:\biocbld\bbs-2.2-bioc\meat\pairseqsim\chm\pairseqsim.chm, 28,413 bytes
Compression decreased file by 38,346 bytes.
adding MD5 sums
* DONE (pairseqsim)
* creating vignettes ... ERROR
Creating a new generic function for "levels" in "pairseqsim"
Creating a new generic function for "frequency" in "pairseqsim"
Creating a new generic function for "summary" in "pairseqsim"
Refusing to claim no (or even less memmory ... !