made4 1.13.1
Aedin Culhane
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/made4 | | Last Changed Rev: 28106 / Revision: 29143 | | Last Changed Date: 2007-10-21 09:08:54 -0700 (Sun, 21 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/made4.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.13.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'made4' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getdata: no visible binding for global variable ‘intensities’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'bga':
plot.bga
S3 methods shown with full name in documentation object 'cia':
plot.cia
S3 methods shown with full name in documentation object 'comparelists':
print.comparelists
S3 methods shown with full name in documentation object 'ord':
plot.ord
S3 methods shown with full name in documentation object 'suppl':
plot.suppl
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating made4-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './introduction.tex' ...
Package natbib Warning: Citation `Thioulouse1997' on page 1 undefined on input
Package natbib Warning: Citation `Eisen1998' on page 3 undefined on input line
Package natbib Warning: Citation `Fellenberg2001' on page 5 undefined on input
Package natbib Warning: Citation `DoledecChessel1987' on page 10 undefined on i
Package natbib Warning: Citation `Culhane2002' on page 10 undefined on input li
Package natbib Warning: Citation `DoledecChessel1994' on page 10 undefined on i
Package natbib Warning: Citation `Culhane2003' on page 10 undefined on input li
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './introduction.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './introduction.tex' ...
* creating made4-manual.tex ... OK
* checking made4-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/made4.Rcheck
* Installing *source* package 'made4' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: ade4
Attaching package: 'ade4'
The following object(s) are masked from package:base :
within
** help
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>>> Building/Updating help pages for package 'made4'
Formats: text html latex example
NCI60 text html latex example
array2ade4 text html latex example
bet.coinertia text html latex example
between.graph text html latex example
bga text html latex example
bga.jackknife text html latex example
bga.suppl text html latex example
checkfac text html latex
chime3D text html latex
cia text html latex example
commonMap text html latex example
comparelists text html latex example
do3d text html latex example
dudi.rwcoa text html latex
forrwcoa text html latex
genes text html latex
genes1d text html latex example
getcol text html latex example
getdata text html latex
graph1D text html latex example
heatplot text html latex example
html3D text html latex example
jmol3D text html latex
khan text html latex example
ord text html latex example
overview text html latex example
plotarrays text html latex example
plotgenes text html latex example
pretty.dend text html latex example
randomiser text html latex example
s.var text html latex example
sumstats text html latex example
suppl text html latex example
topgenes text html latex example
** building package indices ...
* DONE (made4)