lumi 1.5.10
Pan Du
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/lumi | | Last Changed Rev: 29097 / Revision: 29143 | | Last Changed Date: 2007-12-07 10:16:44 -0800 (Fri, 07 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | WARNINGS | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/lumi.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'lumi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'lumi' version '1.5.10'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'lumi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... WARNING
Found the following file(s) with non-portable file names:
inst/doc/Control Probe Profile.txt
These are not fully portable file names
See section 'Package structure' in manual 'Writing R Extensions'.
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating lumi-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating lumi-manual.tex ... OK
* checking lumi-manual.tex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.2-bioc/meat/lumi.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/lumi.Rcheck
---------- Making package lumi ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
preparing package lumi for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: mgcv
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Creating a new generic function for "pairs" in "lumi"
Creating a new generic function for "plot" in "lumi"
installing man source files
installing indices
not zipping data
installing help
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>>> Building/Updating help pages for package 'lumi'
Formats: text html latex example chm
LumiBatch-class text html latex example chm
MAplot-methods text html latex example chm
addControlData2lumi text html latex example chm
addNuId2lumi text html latex example chm
affyExpresso text html latex chm
affyVstRma text html latex chm
bgAdjust text html latex example chm
boxplot-methods text html latex example chm
density-methods text html latex example chm
detectOutlier text html latex example chm
detectionCall text html latex example chm
estimateLumiCV text html latex example chm
example.lumi text html latex example chm
getControlData text html latex example chm
getControlProbe text html latex example chm
getControlType text html latex example chm
hist-methods text html latex example chm
id2seq text html latex example chm
inverseVST text html latex example chm
is.nuID text html latex example chm
lumi.package text html latex chm
lumiB text html latex example chm
lumiExpresso text html latex example chm
lumiN text html latex example chm
lumiQ text html latex example chm
lumiR text html latex example chm
lumiR.batch text html latex example chm
lumiT text html latex example chm
monoSmu text html latex example chm
monoSpline text html latex example chm
nuID2probeID text html latex example chm
nuID2targetID text html latex example chm
pairs-methods text html latex example chm
plot-methods text html latex example chm
plotControlData text html latex example chm
plotHousekeepingGene text html latex example chm
plotSampleRelation text html latex example chm
plotStringencyGene text html latex example chm
plotVST text html latex example chm
probeID2nuID text html latex example chm
rsn text html latex chm
seq2id text html latex example chm
ssn text html latex chm
targetID2nuID text html latex example chm
vst text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\lumi.Rcheck\00_pkg_src\lumi\chm\lumi.chm
Compile time: 0 minutes, 0 seconds
46 Topics
230 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\lumi.Rcheck\00_pkg_src\lumi\chm\lumi.chm, 66,287 bytes
Compression decreased file by 97,870 bytes.
adding MD5 sums
* DONE (lumi)