globaltest 4.9.0
Jelle Goeman
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/globaltest | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for file 'globaltest/DESCRIPTION' ... OK
* preparing 'globaltest':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst563641915
---------- Making package globaltest ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package globaltest for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'globaltest'
Formats: text html latex example chm
GOstructure text html latex chm
annotation.vandeVijver text html latex chm
checkerboard text html latex example chm
geneplot text html latex example chm
globaltest text html latex example chm
gostructure.vandeVijver text html latex chm
gt.barplot-class text html latex chm
gt.result-class text html latex chm
gtGO text html latex example chm
mlogit text html latex example chm
multtest text html latex example chm
permutations text html latex example chm
regressionplot text html latex example chm
sampleplot text html latex example chm
sampling text html latex example chm
vandeVijver text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\globaltest\chm\globaltest.chm
Compile time: 0 minutes, 0 seconds
17 Topics
161 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\globaltest\chm\globaltest.chm, 48,269 bytes
Compression decreased file by 45,629 bytes.
adding MD5 sums
* DONE (globaltest)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: multtest
Loading required package: survival
Loading required package: splines
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Loading required package: GO
Loading required package: graph
Loading required package: GO.db
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Error: processing vignette 'GlobalTest.Rnw' failed with diagnostics:
chunk 33 (label=visualizeGO)
Error in library(Rgraphviz) : there is no package called 'Rgraphviz'
Execution halted