flowViz 1.3.2
Florian Hahne
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowViz | | Last Changed Rev: 29141 / Revision: 29143 | | Last Changed Date: 2007-12-10 20:29:49 -0800 (Mon, 10 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/flowViz.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'flowViz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowViz' version '1.3.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowViz' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating flowViz-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './filters.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './filters.tex' ...
* creating flowViz-manual.tex ... OK
* checking flowViz-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/flowViz.Rcheck
* Installing *source* package 'flowViz' ...
** R
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-03)
Attaching package: 'rrcov'
The following object(s) are masked from package:stats :
biplot,
predict,
screeplot
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: misc3d
Loading required package: rgl
Attaching package: 'flowCore'
The following object(s) are masked from package:stats :
filter
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
Loading required package: MASS
Loading required package: RColorBrewer
Creating a new generic function for "ecdfplot" in "flowViz"
Creating a new generic function for "densityplot" in "flowViz"
Creating a new generic function for "levelplot" in "flowViz"
Creating a new generic function for "qqmath" in "flowViz"
Creating a new generic function for "splom" in "flowViz"
Creating a new generic function for "parallel" in "flowViz"
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "filterBoundary" no definition for class: "curv2Gate"
Creating a new generic function for "xyplot" in "flowViz"
** help
>>> Building/Updating help pages for package 'flowViz'
Formats: text html latex example
ecdfplot text html latex example
flowPlot text html latex example
flowViz-package text html latex example
latticeMethods-flowSet text html latex example
timeLinePlot text html latex example
xyplot text html latex example
** building package indices ...
* DONE (flowViz)