flowCore 1.5.7
Nolwenn Le Meur
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowCore | | Last Changed Rev: 29112 / Revision: 29143 | | Last Changed Date: 2007-12-08 23:02:01 -0800 (Sat, 08 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | WARNINGS | OK |
* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst77642727
---------- Making package flowCore ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making biexponential.d from biexponential.c
making inPolygon.d from inPolygon.c
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c biexponential.c -o biexponential.o
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c inPolygon.c -o inPolygon.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include -i flowCore_res.rc -o flowCore_res.o
gcc -std=gnu99 -shared -s -o flowCore.dll flowCore.def biexponential.o inPolygon.o flowCore_res.o -Ld:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package flowCore for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: misc3d
Loading required package: rgl
Warning: argument in method definition changed from (e1) to (x)
Creating a new generic function for "colnames" in "flowCore"
Creating a new generic function for "colnames<-" in "flowCore"
Creating a new generic function for "nrow" in "flowCore"
Creating a new generic function for "ncol" in "flowCore"
installing man source files
installing indices
not zipping data
installing help
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \examples
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Note: removing empty section \description
Note: removing empty section \description
>>> Building/Updating help pages for package 'flowCore'
Formats: text html latex example chm
GvHD text html latex chm
KmeansFilter text html latex example chm
Subset-methods text html latex example chm
arcsinhTransform text html latex example chm
biexponentialTransform text html latex example chm
coerce text html latex example chm
compensate text html latex example chm
concreteFilter-class text html latex chm
each_col text html latex example chm
ellipsoidGate text html latex example chm
expressionFilter-class text html latex chm
filter-and-methods text html latex chm
filter-class text html latex chm
filter-in-methods text html latex chm
filter-on-methods text html latex example chm
filter text html latex example chm
filterDetails-methods text html latex chm
filterReference-class text html latex chm
filterResult-class text html latex example chm
filterSet-class text html latex example chm
flowFrame-class text html latex chm
flowSet-class text html latex example chm
flowSet text html latex chm
fsApply text html latex example chm
identifier text html latex example chm
keyword-methods text html latex example chm
linearTransform text html latex example chm
lnTransform text html latex example chm
logTransform text html latex example chm
logicalFilterResult-class text html latex example chm
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parameters text html latex example chm
print.filterSummary text html latex example chm
quadraticTransform text html latex example chm
randomFilterResult-class text html latex chm
read.FCS text html latex example chm
read.FCSheader text html latex example chm
read.flowSet text html latex example chm
rectangleGate text html latex example chm
sampleFilter-class text html latex example chm
sampleFilter text html latex example chm
scaleTransform text html latex example chm
setOperationFilter-class text html latex chm
spillover-flowSet text html latex chm
splitScaleTransform text html latex example chm
transform-class text html latex example chm
transformFilter-class text html latex example chm
transformList-class text html latex example chm
transformMap-class text html latex example chm
truncateTransform text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.2-bioc\meat\flowCore\chm\flowCore.chm
Compile time: 0 minutes, 0 seconds
55 Topics
535 Local links
2 Internet links
1 Graphic
Created d:\biocbld\bbs-2.2-bioc\meat\flowCore\chm\flowCore.chm, 87,235 bytes
Compression decreased file by 185,831 bytes.
adding MD5 sums
* DONE (flowCore)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'flowCore/unitTests/standardsCompliance/Compensation-ML_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/FCS_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/FCS_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/RUnitScript_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Transformation-ML_ComplianceTests' is empty
* building 'flowCore_1.5.7.tar.gz'