factDesign 1.13.0
Denise Scholtens
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/factDesign | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ ERROR ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | ERROR | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/factDesign.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'factDesign/DESCRIPTION' ... OK
* this is package 'factDesign' version '1.13.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'factDesign' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating factDesign-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'factDesign-Ex.R' failed.
The error most likely occurred in:
> ### * contrasts
>
> flush(stderr()); flush(stdout())
>
> ### Name: contrasts
> ### Title: Construct appropriate lambda matrix and test linear contrasts of
> ### the parameter estimates from a linear model.
> ### Aliases: contrastTest par2lambda
> ### Keywords: models design htest
>
> ### ** Examples
>
>
> data(estrogen)
> ES <- pData(estrogen)[["ES"]]
> TIME <- pData(estrogen)[["TIME"]]
> fit <- lm(exprs(estrogen)["40079_at",] ~ ES + TIME + ES*TIME)
> betaNames <- names(fit[["coef"]])
> betas <- list(c("ESP"),c("ESP","ESP:TIME48h"))
> coefs <- list(c(1),c(1,1))
> lambda <- par2lambda(betaNames,betas,coefs)
Error in lambda[i, betas[[i]]] <- coefs[[i]] :
no 'dimnames' attribute for array
Calls: par2lambda
Execution halted
/loc/home/biocbuild/bbs-2.2-bioc/meat/factDesign.Rcheck
* Installing *source* package 'factDesign' ...
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'factDesign'
Formats: text html latex example
contrasts text html latex example
estrogen text html latex example
findFC text html latex example
kRepsOverA text html latex example
outliers text html latex example
** building package indices ...
* DONE (factDesign)