externalVector 1.5.2
Biocore Team c/o BioC user list
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/externalVector | | Last Changed Rev: 26527 / Revision: 29143 | | Last Changed Date: 2007-08-20 09:33:20 -0700 (Mon, 20 Aug 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ ERROR ] | ERROR |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | ERROR | ERROR |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.5.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... ERROR
Installation failed.
See 'E:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck/00install.out' for details.
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck
---------- Making package externalVector ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making allocator.d from allocator.c
making arraySummary.d from arraySummary.c
making coerce.d from coerce.c
making externalVector.d from externalVector.c
making groups.d from groups.c
making math.d from math.c
making slice.d from slice.c
making storage.d from storage.c
making subscript.d from subscript.c
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c allocator.c -o allocator.o
allocator.c: In function 'gcExternalPtr_new':
allocator.c:32: warning: passing argument 1 of 'R_MakeExternalPtr' discards qualifiers from pointer target type
allocator.c:44: warning: passing argument 1 of 'R_MakeExternalPtr' discards qualifiers from pointer target type
allocator.c: In function 'gcExternalPtr_restore':
allocator.c:76: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
allocator.c: In function 'gcExternalPtr_resizeInternal':
allocator.c:100: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
allocator.c:136: warning: passing argument 1 of 'memcpy' discards qualifiers from pointer target type
allocator.c:141: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c arraySummary.c -o arraySummary.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization discards qualifiers from pointer target type
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c groups.c -o groups.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c math.c -o math.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c slice.c -o slice.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c storage.c -o storage.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c subscript.c -o subscript.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i externalVector_res.rc -o externalVector_res.o
gcc-sjlj -std=gnu99 -shared -s -o externalVector.dll externalVector.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o externalVector_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
preparing package externalVector for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Error in match.call(fmatch, fcall) :
unused argument(s) (base = "indirectExternalVector")
Error: unable to load R code in package 'externalVector'
Execution halted
make[2]: *** [lazyload] Error 1
make[1]: *** [all] Error 2
make: *** [pkg-externalVector] Error 2
*** Installation of externalVector failed ***
Removing 'E:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck/externalVector'