arrayQualityMetrics 1.3.5
Audrey Kauffmann
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/arrayQualityMetrics | | Last Changed Rev: 28925 / Revision: 29143 | | Last Changed Date: 2007-11-27 03:12:05 -0800 (Tue, 27 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/arrayQualityMetrics.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* this is package 'arrayQualityMetrics' version '1.3.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQualityMetrics' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
aqm.expressionset: no visible binding for global variable 'batext'
aqm.expressionset: no visible binding for global variable 'nfig2'
aqm.expressionset: no visible binding for global variable 'bapng'
makePlot: no visible global function definition for 'devDims'
probesmap: no visible binding for global variable 'con'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating arrayQualityMetrics-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating arrayQualityMetrics-manual.tex ... OK
* checking arrayQualityMetrics-manual.tex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/arrayQualityMetrics.Rcheck
---------- Making package arrayQualityMetrics ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package arrayQualityMetrics for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: RColorBrewer
Loading required package: affyPLM
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: simpleaffy
Loading required package: CCl4
Loading required package: latticeExtra
Loading required package: grid
Loading required package: beadarray
Attaching package: 'beadarray'
The following object(s) are masked from package:limma :
imageplot,
plotMA
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'arrayQualityMetrics'
Formats: text html latex example chm
XYfromGAL text html latex chm
arrayQualityMetrics text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\arrayQualityMetrics.Rcheck\00_pkg_src\arrayQualityMetrics\chm\arrayQualityMetrics.chm
Compile time: 0 minutes, 0 seconds
3 Topics
10 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\arrayQualityMetrics.Rcheck\00_pkg_src\arrayQualityMetrics\chm\arrayQualityMetrics.chm, 18,828 bytes
Compression increased file by 3,705 bytes.
adding MD5 sums
* DONE (arrayQualityMetrics)