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Package 20/251HostnameOS / ArchBUILDCHECKBUILD BIN
annotationTools 1.9.0
Alexandre Kuhn
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/annotationTools
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: annotationTools
Version: 1.9.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check annotationTools_1.9.0.tar.gz
StartedAt: 2007-12-11 05:04:45 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 05:06:00 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 75.5 seconds
RetCode: 0
Status: OK
CheckDir: annotationTools.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/annotationTools.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'annotationTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'annotationTools' version '1.9.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotationTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annotationTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './annotationTools.tex' ...
Package natbib Warning: Citation `RuthLuthi-Carter05222000' on page 7 undefined
Package natbib Warning: Citation `AngelaHodges03152006' on page 7 undefined on 
Package natbib Warning: Citation `AlexandreKuhn05212007' on page 7 undefined on
Package natbib Warning: Citation `Chin-HsingLin01012001' on page 7 undefined on
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './annotationTools.tex' ...
Package natbib Warning: Citation `RuthLuthi-Carter05222000' on page 7 undefined
Package natbib Warning: Citation `AngelaHodges03152006' on page 7 undefined on 
Package natbib Warning: Citation `AlexandreKuhn05212007' on page 7 undefined on
Package natbib Warning: Citation `Chin-HsingLin01012001' on page 7 undefined on
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './annotationTools.tex' ...
* creating annotationTools-manual.tex ... OK
* checking annotationTools-manual.tex ... OK

annotationTools.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/annotationTools.Rcheck
* Installing *source* package 'annotationTools' ...
** R
** data
** inst
** help
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \references
 >>> Building/Updating help pages for package 'annotationTools'
     Formats: text html latex example 
  HG-U133_Plus_2_annot_part         text    html    latex
  HG-U133_Plus_2_ortholog_part      text    html    latex
  Mouse430_2_annot_part             text    html    latex
  annot_HGU133A                     text    html    latex
  compactList                       text    html    latex   example
  getANNOTATION                     text    html    latex   example
  getGENEID                         text    html    latex   example
  getGENEONTOLOGY                   text    html    latex   example
  getGENESYMBOL                     text    html    latex   example
  getGENETITLE                      text    html    latex   example
  getHOMOLOG                        text    html    latex   example
  getMULTIANNOTATION                text    html    latex   example
  getOrthologousProbesets           text    html    latex   example
  getPROBESET                       text    html    latex   example
  homologene_part                   text    html    latex
  listToCharacterVector             text    html    latex   example
  ortho                             text    html    latex
  ps2ps                             text    html    latex   example
  table_human                       text    html    latex
  table_mouse                       text    html    latex
** building package indices ...
* DONE (annotationTools)