annotate 1.17.3
Biocore Team c/o BioC user list
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/annotate | | Last Changed Rev: 28881 / Revision: 29143 | | Last Changed Date: 2007-11-21 09:05:51 -0800 (Wed, 21 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/annotate.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'annotate/DESCRIPTION' ... OK
* this is package 'annotate' version '1.17.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annotate-Ex.R ... OK
* checking examples ... WARNING
Found the following significant warnings:
Warning: 'p2LL' is deprecated.
Deprecated functions may be defunct as soon as of the next release of R.
See ?Deprecated.
* checking package vignettes in 'inst/doc' ... WARNING
Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called 'Rgraphviz'
* creating annotate-manual.tex ... OK
* checking annotate-manual.tex ... OK
WARNING: There were 2 warnings, see
D:/biocbld/bbs-2.2-bioc/meat/annotate.Rcheck/00check.log
for details
installing R.css in D:/biocbld/bbs-2.2-bioc/meat/annotate.Rcheck
---------- Making package annotate ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package annotate for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
installing man source files
installing indices
not zipping data
installing help
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \references
Note: removing empty section \seealso
>>> Building/Updating help pages for package 'annotate'
Formats: text html latex example chm
ACCNUMStats text html latex example chm
GO2heatmap text html latex example chm
GOmnplot text html latex example chm
HTMLPage-class text html latex example chm
LL2homology text html latex example chm
PMIDAmat text html latex example chm
PWAmat text html latex example chm
UniGeneQuery text html latex example chm
accessionToUID text html latex example chm
annPkgName text html latex example chm
aqListGOIDs text html latex example chm
buildChromLocation text html latex example chm
buildPubMedAbst text html latex example chm
chrCats text html latex example chm
chromLocation-class text html latex example chm
compatibleVersions text html latex example chm
dropECode text html latex example chm
filterGOByOntology text html latex example chm
findNeighbors text html latex example chm
genbank text html latex example chm
genelocator text html latex example chm
getAnnMap text html latex example chm
getEvidence text html latex example chm
getGOTerm text html latex example chm
getOntology text html latex example chm
getPMInfo text html latex example chm
getSYMBOL text html latex example chm
getSeq4Acc text html latex example chm
getTDRows text html latex chm
hasGOannote text html latex example chm
hgByChroms text html latex example chm
hgCLengths text html latex example chm
hgu95AProbLocs text html latex chm
hgu95Achroloc text html latex example chm
hgu95Achrom text html latex example chm
hgu95All text html latex example chm
hgu95Asym text html latex example chm
homoData-class text html latex example chm
htmlpage text html latex example chm
locuslinkById text html latex example chm
locuslinkQuery text html latex example chm
makeAnchor text html latex example chm
mapOrgs text html latex chm
neighborGeneFinder text html latex example chm
p2LL text html latex example chm
pm.abstGrep text html latex example chm
pm.getabst text html latex example chm
pm.titles text html latex example chm
pmAbst2HTML text html latex example chm
pmid2MIAME text html latex example chm
pmidQuery text html latex example chm
probesByLL text html latex example chm
pubMedAbst-class text html latex example chm
pubmed text html latex example chm
readGEOAnn text html latex example chm
serializeEnv text html latex example chm
usedChromGenes text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.2-bioc\meat\annotate.Rcheck\00_pkg_src\annotate\chm\annotate.chm
Compile time: 0 minutes, 0 seconds
58 Topics
297 Local links
5 Internet links
1 Graphic
Created d:\biocbld\bbs-2.2-bioc\meat\annotate.Rcheck\00_pkg_src\annotate\chm\annotate.chm, 92,309 bytes
Compression decreased file by 134,474 bytes.
adding MD5 sums
* DONE (annotate)