affycomp 1.15.0
Rafael A. Irizarry
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affycomp | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/affycomp.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'affycomp/DESCRIPTION' ... OK
* this is package 'affycomp' version '1.15.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affycomp' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
affycomp: no visible binding for global variable ‘mas5.assessment’
read.dilution: no visible binding for global variable
‘dilution.phenodata’
read.spikein: no visible binding for global variable
‘spikein.phenodata’
read.spikein: no visible binding for global variable
‘hgu133a.spikein.phenodata’
remove.hgu133a.xhyb: no visible binding for global variable
‘hgu133a.spikein.xhyb’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating affycomp-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './affycomp.tex' ...
Package natbib Warning: Citation `RMA' on page 1 undefined on input line 60.
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './affycomp.tex' ...
Package natbib Warning: Citation `RMA' on page 2 undefined on input line 60.
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './affycomp.tex' ...
* creating affycomp-manual.tex ... OK
* checking affycomp-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/affycomp.Rcheck
* Installing *source* package 'affycomp' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
>>> Building/Updating help pages for package 'affycomp'
Formats: text html latex example
SD text html latex example
affycomp.compfigs.auxiliary text html latex example
affycomp.figures.auxiliary text html latex example
affycomp.table text html latex example
affycompPlot text html latex example
assessAll text html latex
assessDilution text html latex
assessSD text html latex
assessSpikeIn text html latex
assessSpikeIn2 text html latex
dilution.phenodata text html latex
exprset.log text html latex
hgu133a.spikein.phenodata text html latex
lw.sd.assessment text html latex
mas5.assessment text html latex
readin text html latex
remove.hgu133a.xhyb text html latex
rma.assessment text html latex
rma.sd.assessment text html latex
spikein.phenodata text html latex
xhyb text html latex
** building package indices ...
* DONE (affycomp)