SemSim 1.5.0
Xiang Guo
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SemSim | | Last Changed Rev: 29120 / Revision: 29143 | | Last Changed Date: 2007-12-09 21:08:47 -0800 (Sun, 09 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/SemSim.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'SemSim/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SemSim' version '1.5.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SemSim' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found possibly global 'T' or 'F' in the following function:
mtermSim
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SemSim-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './SemSim.tex' ...
Package natbib Warning: Citation `InteractionVal' on page 1 undefined on input
Package natbib Warning: Citation `RelSim' on page 1 undefined on input line 24.
Package natbib Warning: Citation `Lord3Sim' on page 2 undefined on input line 3
Package natbib Warning: Citation `RelSim' on page 2 undefined on input line 32.
Package natbib Warning: Citation `RelSim' on page 2 undefined on input line 32.
Package natbib Warning: Citation `FunCluster' on page 3 undefined on input line
Package natbib Warning: Citation `ClusterVal' on page 4 undefined on input line
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './SemSim.tex' ...
Package natbib Warning: Citation `InteractionVal' on page 1 undefined on input
Package natbib Warning: Citation `RelSim' on page 1 undefined on input line 24.
Package natbib Warning: Citation `Lord3Sim' on page 2 undefined on input line 3
Package natbib Warning: Citation `RelSim' on page 2 undefined on input line 32.
Package natbib Warning: Citation `RelSim' on page 2 undefined on input line 32.
Package natbib Warning: Citation `FunCluster' on page 3 undefined on input line
Package natbib Warning: Citation `ClusterVal' on page 4 undefined on input line
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './SemSim.tex' ...
* creating SemSim-manual.tex ... OK
* checking SemSim-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/SemSim.Rcheck
* Installing *source* package 'SemSim' ...
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'SemSim'
Formats: text html latex example
GOCount text html latex
Schreiber text html latex example
SemSim-internal text html latex
SemSim-package text html latex
geneSim text html latex example
mgeneSim text html latex example
mtermSim text html latex example
termSim text html latex example
** building package indices ...
* DONE (SemSim)