Rdisop 0.5.1
Steffen Neumann
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop | | Last Changed Rev: 29100 / Revision: 29143 | | Last Changed Date: 2007-12-07 12:27:59 -0800 (Fri, 07 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | OK | OK |
* checking for file 'Rdisop/DESCRIPTION' ... OK
* preparing 'Rdisop':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst447615408
---------- Making package Rdisop ------------
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"d:\biocbld\bbs-2.2-bioc\R/include" -I"d:\biocbld\bbs-2.2-bioc\R/src/include" -Wall -O2
Rcpp.cpp: In function 'char* copyMessageToR(const char*)':
Rcpp.cpp:884: warning: deprecated conversion from string constant to 'char*'
ar r libRcpp.a Rcpp.o
c:\Rtools\MinGW\bin\ar.exe: creating libRcpp.a
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
-rwxr-xr-x 1 biocbuild mkpasswd 2806048 Dec 8 00:09 src/win/libims-0.dll
-rwxr-xr-x 1 biocbuild mkpasswd 2806048 Dec 8 00:09 src/win/libims.dll
total 5488
-rwxr-xr-x 1 biocbuild mkpasswd 2806048 Dec 11 04:37 libims-0.dll
-rwxr-xr-x 1 biocbuild mkpasswd 2806048 Dec 11 04:37 libims.dll
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making disop.d from disop.cpp
g++ -Id:/biocbld/bbs-2.2-bioc/R/include -I./imslib/src -I../RcppSrc/ -O2 -Wall -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:120: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:205: warning: comparison between signed and unsigned integer expressions
disop.cpp:208: warning: comparison between signed and unsigned integer expressions
disop.cpp:216: warning: comparison between signed and unsigned integer expressions
disop.cpp:216: warning: comparison between signed and unsigned integer expressions
disop.cpp:169: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&)':
disop.cpp:726: warning: deprecated conversion from string constant to 'char*'
disop.cpp:727: warning: deprecated conversion from string constant to 'char*'
disop.cpp:729: warning: deprecated conversion from string constant to 'char*'
disop.cpp:731: warning: deprecated conversion from string constant to 'char*'
disop.cpp:732: warning: deprecated conversion from string constant to 'char*'
disop.cpp:733: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include -i Rdisop_res.rc -o Rdisop_res.o
g++ -shared -s -o Rdisop.dll Rdisop.def disop.o Rdisop_res.o -Ld:/biocbld/bbs-2.2-bioc/R/bin -L./win -lims -L../RcppSrc/ -lRcpp -lR
Info: resolving ims::IsotopeDistribution::SIZE by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-import)
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'Rdisop'
Formats: text html latex example chm
RcppVersion text html latex example chm
addMolecules text html latex example chm
decomposeMass text html latex example chm
getMolecule text html latex example chm
initializeCHNOPS text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.2-bioc\meat\Rdisop\chm\Rdisop.chm
Compile time: 0 minutes, 0 seconds
6 Topics
24 Local links
0 Internet links
1 Graphic
Created d:\biocbld\bbs-2.2-bioc\meat\Rdisop\chm\Rdisop.chm, 21,263 bytes
Compression decreased file by 1,767 bytes.
adding MD5 sums
* DONE (Rdisop)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Rdisop_0.5.1.tar.gz'