RbcBook1 1.7.0
Vince Carey
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RbcBook1 | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ ERROR ] | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/RbcBook1.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'RbcBook1/DESCRIPTION' ... OK
* this is package 'RbcBook1' version '1.7.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RbcBook1' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
remapAff: no visible binding for global variable
'hgu95av2SYMBOL'
* checking Rd files ... WARNING
Rd files without 'description':
rpart2gNEL.Rd
These entries are required in an Rd file.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating RbcBook1-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'RbcBook1-Ex.R' failed.
The error most likely occurred in:
> ### * rpart2gNEL
>
> flush(stderr()); flush(stdout())
>
> ### Name: rpart2gNEL
> ### Title: convert an rpart object to a graphNEL instance
> ### Aliases: rpart2gNEL rpart2gNEL grabSplitV remapAff
> ### Keywords: models
>
> ### ** Examples
>
> library(rpart)
> example(rpart)
rpart> fit <- rpart(Kyphosis ~ Age + Number + Start, data=kyphosis)
rpart> fit2 <- rpart(Kyphosis ~ Age + Number + Start, data=kyphosis,
rpart+ parms=list(prior=c(.65,.35), split='information'))
rpart> fit3 <- rpart(Kyphosis ~ Age + Number + Start, data=kyphosis,
rpart+ control=rpart.control(cp=.05))
rpart> par(mfrow=c(1,2), xpd=NA) # otherwise on some devices the text is clipped
rpart> plot(fit)
rpart> text(fit, use.n=TRUE)
rpart> plot(fit2)
rpart> text(fit2, use.n=TRUE)
> ff = rpart2gNEL(fit2)
> ff
Warning: The edgemode slot is deprecated. Use 'updateGraph' to update this graph object.
Error in if (!isDirected(object)) { : argument is of length zero
Calls: <Anonymous> -> <Anonymous> -> numEdges -> numEdges
Execution halted
installing R.css in D:/biocbld/bbs-2.2-bioc/meat/RbcBook1.Rcheck
---------- Making package RbcBook1 ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
Note: removing empty section \arguments
Note: removing empty section \arguments
Note: removing empty section \description
Note: removing empty section \description
>>> Building/Updating help pages for package 'RbcBook1'
Formats: text html latex example chm
bcStangle text html latex example chm
bcSweave text html latex example chm
bcr text html latex example chm
checkVerbatimLines text html latex example chm
imageSize text html latex example chm
perf text html latex example chm
requireAllBook1 text html latex example chm
rpart2gNEL text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.2-bioc\meat\RbcBook1.Rcheck\00_pkg_src\RbcBook1\chm\RbcBook1.chm
Compile time: 0 minutes, 0 seconds
9 Topics
31 Local links
0 Internet links
1 Graphic
Created d:\biocbld\bbs-2.2-bioc\meat\RbcBook1.Rcheck\00_pkg_src\RbcBook1\chm\RbcBook1.chm, 24,065 bytes
Compression decreased file by 4,448 bytes.
adding MD5 sums
* DONE (RbcBook1)