PGSEA 1.7.0
Karl Dykema
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PGSEA | | Last Changed Rev: 29102 / Revision: 29143 | | Last Changed Date: 2007-12-07 12:45:26 -0800 (Fri, 07 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | [ ERROR ] | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for file 'PGSEA/DESCRIPTION' ... OK
* preparing 'PGSEA':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
/tmp/Rinst300739486
* Installing *source* package 'PGSEA' ...
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'PGSEA'
Formats: text html latex example
GOLUBmcs text html latex example
PGSEA text html latex example
VAIgsc text html latex example
VAImcs text html latex example
aggregateExprs text html latex example
convertSmc text html latex example
editSmc text html latex example
go2smc text html latex example
kegg2smc text html latex example
nbEset text html latex example
readGmt text html latex example
readSmc text html latex example
scanSmc text html latex example
smcPlot text html latex example
writeGmt text html latex example
writeSmc text html latex example
** building package indices ...
* DONE (PGSEA)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Ruuid
Loading required package: RCurl
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/by_series/GSE7023/GSE7023_family.soft.gz'
ftp data connection made, file length 8931675 bytes
opened URL
==================================================
downloaded 8.5 Mb
Error: processing vignette 'PGSEA2.Rnw' failed with diagnostics:
chunk 10
Error in readChar(con, 5) : cannot open the connection
In addition: Warning message:
In readChar(con, 5) : cannot open compressed file 'ABC.rda'
Execution halted