MCRestimate 1.11.2
Markus Ruschhaupt
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MCRestimate | | Last Changed Rev: 28537 / Revision: 29143 | | Last Changed Date: 2007-11-07 00:36:48 -0800 (Wed, 07 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/MCRestimate.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'MCRestimate/DESCRIPTION' ... OK
* this is package 'MCRestimate' version '1.11.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MCRestimate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MCRestimate-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './UsingMCRestimate.tex' ...
Package natbib Warning: Citation `Golub.1999' on page 1 undefined on input line
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './UsingMCRestimate.tex' ...
* creating MCRestimate-manual.tex ... OK
* checking MCRestimate-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/MCRestimate.Rcheck
* Installing *source* package 'MCRestimate' ...
** R
** inst
** preparing package for lazy loading
Loading required package: e1071
Loading required package: class
Loading required package: pamr
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: randomForest
randomForest 4.5-22
Type rfNews() to see new features/changes/bug fixes.
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: golubEsets
Loading required package: arrayMagic
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: genefilter
****** Deprecation warning ***
* The package 'arrayMagic' is deprecated and will *
* not be supported after the retirement of the *
* exprSet class from Bioconductor. *
* Please consider using the NchannelSet class from *
* Biobase and functions from the limma and *
* arrayQualityMetrics packages. *
****************************************************
Loading required package: gpls
Loading required package: ROC
Attaching package: 'ROC'
The following object(s) are masked from package:genefilter :
AUC,
pAUC
** help
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>>> Building/Updating help pages for package 'MCRestimate'
Formats: text html latex example
ClassifierBuild text html latex example
MCRconfusion text html latex example
MCRestimate text html latex example
MCRestimateMerge text html latex example
PLR text html latex example
PLR.add.fkt text html latex
SVM.OVA.wrap text html latex
class.factor.format text html latex example
gene.reduction.fkt text html latex example
geneReduction text html latex example
important.variable.names text html latex
intersectList text html latex example
plot.MCRestimate text html latex example
replace.NA text html latex
select.NA.elements text html latex
whatiscorrect text html latex
wrapper.fkt text html latex
** building package indices ...
* DONE (MCRestimate)