GraphAT 1.11.0
Thomas LaFramboise
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GraphAT | | Last Changed Rev: 28214 / Revision: 29143 | | Last Changed Date: 2007-10-24 23:38:31 -0700 (Wed, 24 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ ERROR ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | ERROR | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GraphAT.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'GraphAT/DESCRIPTION' ... OK
* this is package 'GraphAT' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GraphAT' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GraphAT-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'GraphAT-Ex.R' failed.
The error most likely occurred in:
> ### * giaever
>
> flush(stderr()); flush(stdout())
>
> ### Name: giaever
> ### Title: Yeast Gene-Knockout Fitness Data
> ### Aliases: giaever
> ### Keywords: datasets
>
> ### ** Examples
>
> data(giaever)
>
> ## Find the 3000 most variable genes, according to sd/mean:
>
> varMeas<-function(vec,na.rm=TRUE)
+ sd(vec,na.rm = na.rm)/mean(vec,na.rm = na.rm)
>
> variability<-apply(giaever, 1, varMeas)
Error in var(x, na.rm = na.rm) : no complete element pairs
Calls: apply -> FUN -> sd -> var
Execution halted
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GraphAT.Rcheck
---------- Making package GraphAT ------------
adding build stamp to DESCRIPTION
installing R files
installing data files
installing man source files
installing indices
not zipping data
installing help
Note: removing empty section \references
Note: removing empty section \references
>>> Building/Updating help pages for package 'GraphAT'
Formats: text html latex example chm
Phenoclusters text html latex example chm
causton text html latex example chm
cellcycle text html latex example chm
clust2Mat text html latex example chm
depthmat text html latex example chm
getpvalue text html latex example chm
giaever text html latex example chm
mRNAclusters text html latex example chm
makeClustM text html latex example chm
mat2UndirG text html latex example chm
permPower text html latex example chm
perms text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\GraphAT.Rcheck\00_pkg_src\GraphAT\chm\GraphAT.chm
Compile time: 0 minutes, 0 seconds
13 Topics
37 Local links
5 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\GraphAT.Rcheck\00_pkg_src\GraphAT\chm\GraphAT.chm, 29,428 bytes
Compression decreased file by 8,458 bytes.
adding MD5 sums
* DONE (GraphAT)