GeneMeta 1.11.0
Biocore Team c/o BioC user list
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneMeta | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/GeneMeta.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'GeneMeta/DESCRIPTION' ... OK
* this is package 'GeneMeta' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneMeta' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GeneMeta-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './GeneMeta.tex' ...
Package natbib Warning: Citation `Choi.2003' on page 1 undefined on input line
Package natbib Warning: Citation `Choi.2003' on page 1 undefined on input line
Package natbib Warning: Citation `Choi.2003' on page 1 undefined on input line
Package natbib Warning: Citation `West.2001' on page 2 undefined on input line
Package natbib Warning: Citation `Choi.2003' on page 8 undefined on input line
Package natbib Warning: Citation `Choi.2003' on page 10 undefined on input line
Package natbib Warning: Citation `Choi.2003' on page 11 undefined on input line
Package natbib Warning: Citation `Tusher.2001' on page 11 undefined on input li
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './GeneMeta.tex' ...
* creating GeneMeta-manual.tex ... OK
* checking GeneMeta-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/GeneMeta.Rcheck
* Installing *source* package 'GeneMeta' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \examples
Note: removing empty section \value
Note: removing empty section \details
>>> Building/Updating help pages for package 'GeneMeta'
Formats: text html latex example
CountPlot text html latex
Nevins text html latex example
dstar text html latex example
f.Q text html latex example
tau text html latex example
zscore text html latex example
** building package indices ...
* DONE (GeneMeta)